Performance Evaluation of Parallel Inference of Large Phylogenetic Trees in Santos Dumont Supercomputer: A Practical Approach. - Kary A. C. S. Ocaña; Carla Osthoff; Micaella Coelho; Marcelo Galheigo; Isabela Canuto; Douglas E. M. de Oliveira; Daniel de Oliveira 001 (CARLA, 2019)

Towards a Science Gateway for Bioinformatics: Experiences in the Brazilian System of High Performance Computing. - Kary Ann del Carmen Ocaña Gautherot; Marcelo Galheigo; Carla Osthoff; Luiz M. R. Gadelha Jr.; Antônio Tadeu A. Gomes; Daniel de Oliveira 001; Fábio Porto 001; Ana Tereza Ribeiro de Vasconcelos (CCGRID, 2019)

BioinfoPortal: A scientific gateway for integrating bioinformatics applications on the Brazilian national high-performance computing network. - Kary A. C. S. Ocaña; Marcelo Galheigo; Carla Osthoff; Luiz M. R. Gadelha Jr.; Fábio Porto 001; Antônio Tadeu A. Gomes; Daniel de Oliveira 001; Ana Tereza Ribeiro de Vasconcelos (Future Gener. Comput. Syst., 2020)

Rotational Profiler: A Fast, Automated, and Interactive Server to Derive Torsional Dihedral Potentials for Classical Molecular Simulations. - Victor H. Rusu; Denys E. S. Santos; Marcelo Depólo Polêto; Marcelo Galheigo; Antônio Tadeu A. Gomes; Hugo Verli; Thereza A. Soares; Roberto D. Lins (J. Chem. Inf. Model., 2020)

ParslRNA-Seq: An Efficient and Scalable RNAseq Analysis Workflow for Studies of Differentiated Gene Expression. - Kary A. C. S. Ocaña; Lucas Cruz; Micaella Coelho; Rafael Terra; Marcelo Galheigo; Andre Ramos Carneiro; Diego Carvalho 001; Luiz M. R. Gadelha Jr.; Francieli Zanon Boito; Philippe O. A. Navaux; Carla Osthoff (CARLA, 2022)

Parallel Performance and I/O Profiling of HPC RNA-Seq Applications. - Lucas Cruz; Micaella Coelho; Marcelo Galheigo; André Ramos Carneiro; Diego Carvalho 001; Luiz M. R. Gadelha Jr.; Francieli Zanon Boito; Philippe O. A. Navaux; Carla Osthoff; Kary A. C. S. Ocaña (Computación y Sistemas, 2022)