Ligand-Info, Searching for Similar Small Compounds Using Index Profiles. - Marcin von Grotthuss; Jakub Pas; Leszek Rychlewski (Bioinform., 2003)

ORFeus: detection of distant homology using sequence profiles and predicted secondary structure. - Krzysztof Ginalski; Jakub Pas; Lucjan Stanislaw Wyrwicz; Marcin von Grotthuss; Janusz M. Bujnicki; Leszek Rychlewski (Nucleic Acids Res., 2003)

Detecting distant homology with Meta-BASIC. - Krzysztof Ginalski; Marcin von Grotthuss; Nick V. Grishin; Leszek Rychlewski (Nucleic Acids Res., 2004)

PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics. - Marcin von Grotthuss; Dariusz Plewczynski; Krzysztof Ginalski; Leszek Rychlewski; Eugene I. Shakhnovich (BMC Bioinform., 2006)

Three dimensional model of severe acute respiratory syndrome coronavirus helicase ATPase catalytic domain and molecular design of severe acute respiratory syndrome coronavirus helicase inhibitors. - Marcin Hoffmann; Krystian Eitner; Marcin von Grotthuss; Leszek Rychlewski; Ewa Banachowicz; Tomasz Grabarkiewicz; Tomasz Szkoda; Andrzej Kolinski (J. Comput. Aided Mol. Des., 2006)

3D-Fun: predicting enzyme function from structure. - Marcin von Grotthuss; Dariusz Plewczynski; Gert Vriend; Leszek Rychlewski (Nucleic Acids Res., 2008)

VoteDock: Consensus docking method for prediction of protein-ligand interactions. - Dariusz Plewczynski; Michal Lazniewski; Marcin von Grotthuss; Leszek Rychlewski; Krzysztof Ginalski (J. Comput. Chem., 2011)

HarmonyDOCK: The Structural Analysis of Poses in Protein-Ligand Docking. - Dariusz Plewczynski; Anna Philips; Marcin von Grotthuss; Leszek Rychlewski; Krzysztof Ginalski (J. Comput. Biol., 2014)