Assembly of fingerprint contigs: parallelized FPC. - Steven R. Ness; W. Terpstra; Martin Krzywinski; Marco A. Marra; Steven J. M. Jones (Bioinform., 2002)

Automated ordering of fingerprinted clones. - Stephane Flibotte; Readman Chiu; Chris Fjell; Martin Krzywinski; Jacqueline E. Schein; Heesun Shin; Marco A. Marra (Bioinform., 2004)

Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data. - Ágnes Baross; Allen D. Delaney; H. Irene Li; Tarun Nayar; Stephane Flibotte; Hong Qian; Susanna Y. Chan; Jennifer Asano; Adrian Ally; Manqiu Cao; Patricia Birch; Mabel Brown-John; et al. (BMC Bioinform., 2007)

De novo transcriptome assembly with ABySS. - Inanç Birol; Shaun D. Jackman; Cydney B. Nielsen; Jenny Q. Qian; Richard Varhol; Greg Stazyk; Ryan D. Morin; Yongjun Zhao 002; Martin Hirst; Jacqueline E. Schein; Douglas E. Horsman; Joseph M. Connors; et al. (Bioinform., 2009)

SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors. - Rodrigo Goya; Mark G. F. Sun; Ryan D. Morin; Gillian Leung; Gavin Ha; Kimberley C. Wiegand; Janine Senz; Anamaria Crisan; Marco A. Marra; Martin Hirst; David G. Huntsman; Kevin P. Murphy; et al. (Bioinform., 2010)

Genomic analysis of a rare human tumor. - Steven J. M. Jones; Janessa Laskin; Yvonne Y. Li; Obi L. Griffith; Jianghong An; Mikhail Bilenky; Yaron S. N. Butterfield; Timothee Cezard; Eric Chuah; Richard Corbett; Anthony P. Fejes; Malachi Griffith; et al. (BMC Bioinform., 2010)

LaneRuler: Automated Lane Tracking for DNA Electrophoresis Gel Images. - R. T. F. Wong; Stephane Flibotte; Richard Corbett; Parvaneh Saeedi; Steven J. M. Jones; Marco A. Marra; Jacqueline E. Schein; Inanç Birol (IEEE Trans Autom. Sci. Eng., 2010)

deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data. - Andrew W. McPherson; Fereydoun Hormozdiari; Abdalnasser Zayed; Ryan Giuliany; Gavin Ha; Mark G. F. Sun; Malachi Griffith; Alireza Heravi Moussavi; Janine Senz; Nataliya Melnyk; Marina Pacheco; Marco A. Marra; et al. (PLoS Comput. Biol., 2011)

Hive plots - rational approach to visualizing networks. - Martin Krzywinski; Inanç Birol; Steven J. M. Jones; Marco A. Marra (Briefings Bioinform., 2012)

BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data. - Ken Chen 001; John W. Wallis; Cyriac Kandoth; Joelle M. Kalicki-Veizer; Karen L. Mungall; Andrew J. Mungall; Steven J. M. Jones; Marco A. Marra; Timothy J. Ley; Elaine R. Mardis; Richard K. Wilson; John N. Weinstein; et al. (Bioinform., 2012)

Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data. - Jiarui Ding; Ali Bashashati; Andrew Roth; Arusha Oloumi; Kane Tse; Thomas Zeng 002; Gholamreza Haffari; Martin Hirst; Marco A. Marra; Anne Condon; Sam Aparicio; Sohrab P. Shah (Bioinform., 2012)

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data. - Andrew Roth; Jiarui Ding; Ryan D. Morin; Anamaria Crisan; Gavin Ha; Ryan Giuliany; Ali Bashashati; Martin Hirst; Gulisa Turashvili; Arusha Oloumi; Marco A. Marra; Sam Aparicio; et al. (Bioinform., 2012)

Integrative analysis of 111 reference human epigenomes Open. - Roadmap Epigenomics Consortium; Anshul Kundaje; Wouter Meuleman; Jason Ernst; Misha Bilenky; Angela Yen; Alireza Heravi Moussavi; Pouya Kheradpour; ZhiZhuo Zhang; Jianrong Wang; Michael J. Ziller; Viren Amin; et al. (Nat., 2015)