BSP/CGM Algorithm for Maximum Matching in Convex Bipartite Graphs. - José Soares; Marco Aurelio Stefanes (SBAC-PAD, 2003)

Algorithms for Maximum Independent Set in Convex Bipartite Graphs. - José Soares; Marco Aurelio Stefanes (Algorithmica, 2009)

Repetition-free longest common subsequence. - Said Sadique Adi; Marília D. V. Braga; Cristina G. Fernandes; Carlos Eduardo Ferreira; Fábio Viduani Martinez; Marie-France Sagot; Marco Aurelio Stefanes; Christian Tjandraatmadja; Yoshiko Wakabayashi (Discret. Appl. Math., 2010)

Some results on topological colored motifs in metabolic networks. - Eloi Araujo; Marco Aurelio Stefanes (BIBE, 2013)

SIMBio: Searching and inferring colorful motifs in biological networks. - Diego P. Rubert; Eloi Araujo; Marco Aurelio Stefanes (BIBE, 2015)

Multiple Sequence Alignment using Hybrid Parallel Computing. - Eloi Araujo; Marco Aurelio Stefanes; Valter de O. Ferlete; Luiz C. S. Rozante (BIBE, 2017)

Inferring Gene Regulatory Networks Using Hybrid Parallel Computing. - Jean C. W. K. Ma; Marco Aurelio Stefanes; Carlos H. A. Higa; Luiz C. S. Rozante (ICCSA (1), 2018)

A Hybrid Parallel Implementation for the Maximum Flow Problem. - Marco Aurelio Stefanes; Luiz Fernando Alvino (PDP, 2018)

Heuristics for the Specific Substring Problem with Hamming Distance. - Lucas B. Rocha; Said Sadique Adi; Marco Aurelio Stefanes; Eloi Araujo (BIBE, 2019)

On motifs in colored graphs. - Diego P. Rubert; Eloi Araujo; Marco Aurelio Stefanes; Jens Stoye; Fábio Viduani Martinez (CoRR, 2020)

Searching and inferring colorful topological motifs in vertex-colored graphs. - Diego P. Rubert; Eloi Araujo; Marco Aurelio Stefanes; Jens Stoye; Fábio Viduani Martinez (J. Comb. Optim., 2020)

Scalable parallel algorithms for maximum matching and Hamiltonian circuit in convex bipartite graphs. - Marco Aurelio Stefanes; Diego P. Rubert; José Soares (Theor. Comput. Sci., 2020)

OpenACC Multi-GPU Approach for WSM6 Microphysics. - Hércules Cardoso da Silva; Marco Aurelio Stefanes; Vinícius Capistrano (HiPC, 2021)

Multi-GPU Approach for Large-Scale Multiple Sequence Alignment. - Rodrigo A. de O. Siqueira; Marco Aurelio Stefanes; Luiz C. S. Rozante; David Correa Martins Jr.; Jorge Estefano Santana de Souza; Eloi Araujo (ICCSA (1), 2021)

A Flexible Variant of the Neighbor-Joining for Building Phylogenetic Trees. - A. Chastel Lima; Eloi Araujo; Marco Aurelio Stefanes; Luiz C. S. Rozante (CSCI, 2022)

Fast Flexible Neighbor-Joining Using Multicomputing. - A. Chastel Lima; Eloi Araujo; Marco Aurelio Stefanes; Luiz C. S. Rozante (BIBE, 2023)

Runge-Kutta Method and WSM6 Microphysics for Weather Prediction on Hybrid Parallel Platform. - Hércules Cardoso da Silva; Marco Aurelio Stefanes; Vinícius Capistrano (FedCSIS, 2023)