Accelerating the identification of informative reduced representations of proteins with deep learning for graphs. - Federico Errica; Marco Giulini; Davide Bacciu; Roberto Menichetti; Alessio Micheli; Raffaello Potestio (CoRR, 2020)

EXCOGITO, an Extensible Coarse-Graining Toolbox for the Investigation of Biomolecules by Means of Low-Resolution Representations. - Marco Giulini; Raffaele Fiorentini; Luca Tubiana; Raffaello Potestio; Roberto Menichetti (J. Chem. Inf. Model., 2024)

Modeling Protein-Glycan Interactions with HADDOCK. - Anna Ranaudo; Marco Giulini; Angela Pelissou Ayuso; Alexandre M. J. J. Bonvin (J. Chem. Inf. Model., 2024)

HADDOCK3: A Modular and Versatile Platform for Integrative Modeling of Biomolecular Complexes. - Marco Giulini; Victor Reys; João M. C. Teixeira; Brian Jiménez-García; Rodrigo V. Honorato; Anna Kravchenko; Xiaotong Xu; Raphaëlle Versini; Anna Engel; Stefan Verhoeven; Alexandre M. J. J. Bonvin (J. Chem. Inf. Model., 2025)