Evolutionary Construction of Multiple Graph Alignments for the Structural Analysis of Biomolecules. - Thomas Fober; Eyke Hüllermeier; Marco Mernberger (German Conference on Bioinformatics, 2008)

Evolutionary Construction of Multiple Graph Alignments for Mining Structured Biomolecular Data. - Thomas Fober; Eyke Hüllermeier; Marco Mernberger (LWA, 2008)

Graph-Kernels for the Comparative Analysis of Protein Active Sites. - Thomas Fober; Marco Mernberger; Ralph Moritz; Eyke Hüllermeier (GCB, 2009)

Similarity Analysis of Protein Binding Sites: A Generalization of the Maximum Common Subgraph Measure Based on Quasi-Clique Detection. - Imen Boukhris; Zied Elouedi; Thomas Fober; Marco Mernberger; Eyke Hüllermeier (ISDA, 2009)

Extension and Empirical Comparison of Graph-Kernels for the Analysis of Protein Active Sites. - Thomas Fober; Marco Mernberger; Vitalik Melnikov; Ralph Moritz; Eyke Hüllermeier (LWA, 2009)

Evolutionary construction of multiple graph alignments for the structural analysis of biomolecules. - Thomas Fober; Marco Mernberger; Gerhard Klebe; Eyke Hüllermeier (Bioinform., 2009)

Efficient Similarity Retrieval of Protein Binding Sites based on Histogram Comparison. - Thomas Fober; Marco Mernberger; Gerhard Klebe; Eyke Hüllermeier (GCB, 2010)

SEGA: Semiglobal Graph Alignment for Structure-Based Protein Comparison. - Marco Mernberger; Gerhard Klebe; Eyke Hüllermeier (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Graph-Based Approaches to Protein StructureComparison - From Local to Global Similarity - Marco Mernberger (2011)

GPU-based Cloud computing for comparing the structure of protein binding sites. - Matthias Leinweber; Lars Baumgärtner; Marco Mernberger; Thomas Fober; Eyke Hüllermeier; Gerhard Klebe; Bernd Freisleben (DEST, 2012)

Extended graph-based models for enhanced similarity retrieval in Cavbase. - Timo Krotzky; Thomas Fober; Marco Mernberger; Gerhard Klebe; Eyke Hüllermeier (J. Cheminformatics, 2013)

Graph-based methods for protein structure comparison. - Thomas Fober; Marco Mernberger; Gerhard Klebe; Eyke Hüllermeier (WIREs Data Mining Knowl. Discov., 2013)

Protein Sub-Cellular Localization Prediction for Special compartments via Optimized Time Series Distances. - Marco Mernberger; Daniel Moog; Simone Stork; Stefan Zauner; Uwe G. Maier; Eyke Hüllermeier (J. Bioinform. Comput. Biol., 2014)