Third-generation sequencing data analytics on mobile devices: cache oblivious and out-of-core approaches as a proof-of-concept. - Franco Milicchio; Marco Oliva; Christina Boucher 001; Mattia Prosperi (FNC/MobiSPC, 2018)

Unexpected Predictors of Antibiotic Resistance in Housekeeping Genes of Staphylococcus Aureus. - Mattia Prosperi; Taj Azarian; Judith A. Johnson; Marco Salemi; Franco Milicchio; Marco Oliva (BCB, 2019)

Portable nanopore analytics: are we there yet? - Marco Oliva; Franco Milicchio; Kaden King; Grace Benson; Christina Boucher 001; Mattia Prosperi; Inanç Birol (Bioinform., 2020)

Efficiently Merging r-indexes. - Marco Oliva; Massimiliano Rossi 001; Jouni Sirén; Giovanni Manzini; Tamer Kahveci; Travis Gagie; Christina Boucher 001 (DCC, 2021)

An interleaved hardware-accelerated k-mer parser. - Franco Milicchio; Marco Oliva; Mattia Prosperi (BIBM, 2022)

CSTs for Terabyte-Sized Data. - Marco Oliva; Davide Cenzato; Massimiliano Rossi 001; Zsuzsanna Lipták; Travis Gagie; Christina Boucher 001 (DCC, 2022)

Graph Neural Networks for Relational Inductive Bias in Vision-based Deep Reinforcement Learning of Robot Control. - Marco Oliva; Soubarna Banik; Josip Josifovski; Alois C. Knoll (IJCNN, 2022)

Finding Maximal Exact Matches Using the r-Index. - Massimiliano Rossi 001; Marco Oliva; Paola Bonizzoni; Ben Langmead; Travis Gagie; Christina Boucher 001 (J. Comput. Biol., 2022)

MONI: A Pangenomic Index for Finding Maximal Exact Matches. - Massimiliano Rossi 001; Marco Oliva; Ben Langmead; Travis Gagie; Christina Boucher 001 (J. Comput. Biol., 2022)

Recursive Prefix-Free Parsing for Building Big BWTs. - Marco Oliva; Travis Gagie; Christina Boucher 001 (DCC, 2023)

Acceleration of FM-Index Queries Through Prefix-Free Parsing. - Aaron Hong; Marco Oliva; Dominik Köppl; Hideo Bannai; Christina Boucher 001; Travis Gagie (WABI, 2023)

Re²Pair: Increasing the Scalability of RePair by Decreasing Memory Usage. - Justin Kim; Rahul Varki; Marco Oliva; Christina Boucher 001 (ESA, 2024)

Pfp-fm: an accelerated FM-index. - Aaron Hong; Marco Oliva; Dominik Köppl; Hideo Bannai; Christina Boucher 001; Travis Gagie (Algorithms Mol. Biol., 2024)