CURVES+ web server for analyzing and visualizing the helical, backbone and groove parameters of nucleic acid structures. - Christophe Blanchet; Marco Pasi; Krystyna Zakrzewska; Richard Lavery (Nucleic Acids Res., 2011)

xPyder: A PyMOL Plugin To Analyze Coupled Residues and Their Networks in Protein Structures. - Marco Pasi; Matteo Tiberti; Alberto Arrigoni; Elena Papaleo (J. Chem. Inf. Model., 2012)

Absolute versus Relative Entropy Parameter Estimation in a Coarse-Grain Model of DNA. - Oscar Gonzalez; Marco Pasi; Daiva Petkeviciute; Jaroslaw Glowacki; J. H. Maddocks (Multiscale Model. Simul., 2017)