Web-Beagle: a web server for the alignment of RNA secondary structures. - Eugenio Mattei; Marco Pietrosanto; Fabrizio Ferrè; Manuela Helmer-Citterich (Nucleic Acids Res., 2015)

BEAM web server: a tool for structural RNA motif discovery. - Marco Pietrosanto; Marta Adinolfi; Riccardo Casula; Gabriele Ausiello; Fabrizio Ferrè; Manuela Helmer-Citterich (Bioinform., 2018)

Revisiting the "satisfaction of spatial restraints" approach of MODELLER for protein homology modeling. - Giacomo Janson; Alessandro Grottesi; Marco Pietrosanto; Gabriele Ausiello; Giulia Guarguaglini; Alessandro Paiardini (PLoS Comput. Biol., 2019)

BRIO: a web server for RNA sequence and structure motif scan. - Andrea Guarracino; Gerardo Pepe; Francesco Ballesio; Marta Adinolfi; Marco Pietrosanto; Elisa Sangiovanni; Ilio Vitale; Gabriele Ausiello; Manuela Helmer-Citterich (Nucleic Acids Res., 2021)