Disentangling the Role of Tetranucleotide in the Sequence-Dependence of DNA Conformation: A Molecular Dynamics Approach. - Marcos J. Araúzo-Bravo; Satoshi Fujii; Hidetoshi Kono; Akinori Sarai (APBC, 2006)

Dimensionality of amino acid space and solvent accessibility prediction with neural networks. - Marcos J. Araúzo-Bravo; Shandar Ahmad; Akinori Sarai (Comput. Biol. Chem., 2006)

ReadOut: structure-based calculation of direct and indirect readout energies and specificities for protein-DNA recognition. - Shandar Ahmad; Hidetoshi Kono; Marcos J. Araúzo-Bravo; Akinori Sarai (Nucleic Acids Res., 2006)

How well Fuzzy ARTMAP approximates functions? - J. Manuel Cano Izquierdo; Miguel Pinzolas; Eduardo Gómez-Sánchez; Marcos J. Araúzo-Bravo; Julio Ibarrola (J. Intell. Fuzzy Syst., 2013)

Increased robustness of early embryogenesis through collective decision-making by key transcription factors. - Ali Sharifi-Zarchi; Mehdi Totonchi; Keynoush Khaloughi; Razieh Karamzadeh; Marcos J. Araúzo-Bravo; Hossein Baharvand; Ruzbeh Tusserkani; Hamid Pezeshk; Hamidreza Chitsaz; Mehdi Sadeghi (BMC Syst. Biol., 2015)

P3BSseq: parallel processing pipeline software for automatic analysis of bisulfite sequencing data. - Phuc-Loi Luu; Daniela Gerovska; Mikel Arrospide-Elgarresta; Sugoi Retegi-Carrión; Hans R. Schöler; Marcos J. Araúzo-Bravo (Bioinform., 2017)

NaviSE: superenhancer navigator integrating epigenomics signal algebra. - Alex M. Ascensión; Mikel Arrospide-Elgarresta; Ander Izeta; Marcos J. Araúzo-Bravo (BMC Bioinform., 2017)

BigMPI4py: Python Module for Parallelization of Big Data Objects Discloses Germ Layer Specific DNA Demethylation Motifs. - Alex M. Ascensión; Marcos J. Araúzo-Bravo (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Automatic discrimination between neuroendocrine carcinomas and grade 3 neuroendocrine tumors by deep learning of H&E images. - Alex Arrieta Legorburu; Julen Bohoyo Bengoetxea; Carlos Gracia; Joan C. Ferreres; Maria Rosa Bella-Cueto; Marcos J. Araúzo-Bravo (Comput. Biol. Medicine, 2025)