Biographer: web-based editing and rendering of SBGN compliant biochemical networks. - Falko Krause; Marvin Schulz; Ben Ripkens; Max Flöttmann; Marcus Krantz; Edda Klipp; Thomas Handorf (Bioinform., 2013)

Reaction-contingency based bipartite Boolean modelling. - Max Flöttmann; Falko Krause; Edda Klipp; Marcus Krantz (BMC Syst. Biol., 2013)

Stochastic simulation of Boolean rxncon models: towards quantitative analysis of large signaling networks. - Tomoya Mori; Max Flöttmann; Marcus Krantz; Tatsuya Akutsu; Edda Klipp (BMC Syst. Biol., 2015)

Bud-Localization of CLB2 mRNA Can Constitute a Growth Rate Dependent Daughter Sizer. - Thomas W. Spiesser; Clemens Kühn; Marcus Krantz; Edda Klipp (PLoS Comput. Biol., 2015)

Toward Community Standards and Software for Whole-Cell Modeling. - Dagmar Waltemath; Jonathan R. Karr; Frank T. Bergmann; Vijayalakshmi Chelliah; Michael Hucka; Marcus Krantz; Wolfram Liebermeister; Pedro Mendes 001; Chris J. Myers; Pinar Pir; Begum Alaybeyoglu; Naveen K. Aranganathan; et al. (IEEE Trans. Biomed. Eng., 2016)

Identification of periodic attractors in Boolean networks using a priori information. - Ulrike Münzner; Tomoya Mori; Marcus Krantz; Edda Klipp; Tatsuya Akutsu (PLoS Comput. Biol., 2022)

kboolnet: a toolkit for the verification, validation, and visualization of reaction-contingency (rxncon) models. - Willow Carretero Chavez; Marcus Krantz; Edda Klipp; Irina Kufareva (BMC Bioinform., 2023)

Automated Reasoning in Systems Biology: A Necessity for Precision Medicine. - Pedro Zuidberg Dos Martires; Vincent Derkinderen; Luc De Raedt; Marcus Krantz (KR, 2024)