Finding Characteristic Substructures for Metabolite Classes. - Marcus Ludwig; Franziska Hufsky; Samy Elshamy; Sebastian Böcker (GCB, 2012)

POMAGO: Multiple Genome-Wide Alignment Tool for Bacteria. - Nicolas Wieseke; Marcus Lechner; Marcus Ludwig; Manja Marz (ISBRA, 2013)

Faster Mass Decomposition. - Kai Dührkop; Marcus Ludwig; Marvin Meusel; Sebastian Böcker (WABI, 2013)

Cograph Editing in O(3nn) time and O(2n) space. - W. Timothy J. White; Marcus Ludwig; Sebastian Böcker (CoRR, 2017)

Bayesian networks for mass spectrometric metabolite identification via molecular fingerprints. - Marcus Ludwig; Kai Dührkop; Sebastian Böcker (Bioinform., 2018)

Database-independent molecular formula annotation using Gibbs sampling through ZODIAC. - Marcus Ludwig; Louis-Félix Nothias; Kai Dührkop; Irina Koester; Markus Fleischauer; Martin A. Hoffmann; Daniel Petras; Fernando Vargas; Mustafa Morsy; Lihini Aluwihare; Pieter C. Dorrestein; Sebastian Böcker (Nat. Mach. Intell., 2020)

Publisher Correction: Database-independent molecular formula annotation using Gibbs sampling through ZODIAC. - Marcus Ludwig; Louis-Félix Nothias; Kai Dührkop; Irina Koester; Markus Fleischauer; Martin A. Hoffmann; Daniel Petras; Fernando Vargas; Mustafa Morsy; Lihini Aluwihare; Pieter C. Dorrestein; Sebastian Böcker (Nat. Mach. Intell., 2020)

MassSpecGym: A benchmark for the discovery and identification of molecules. - Roman Bushuiev; Anton Bushuiev; Niek F. de Jonge; Adamo Young; Fleming Kretschmer; Raman Samusevich; Janne Heirman; Fei Wang 062; Luke Zhang; Kai Dührkop; Marcus Ludwig; Nils A. Haupt; et al. (NeurIPS, 2024)