An embedded boundary method for viscous, conducting compressible flow. - Zoran Dragojlovic; Farrokh Najmabadi; Marcus S. Day (J. Comput. Phys., 2006)

A Topological Framework for the Interactive Exploration of Large Scale Turbulent Combustion. - Peer-Timo Bremer; Gunther H. Weber; Julien Tierny; Valerio Pascucci; Marcus S. Day; John B. Bell (eScience, 2009)

Analyzing and Tracking Burning Structures in Lean Premixed Hydrogen Flames. - Peer-Timo Bremer; Gunther H. Weber; Valerio Pascucci; Marcus S. Day; John B. Bell (IEEE Trans. Vis. Comput. Graph., 2010)

Feature Tracking Using Reeb Graphs. - Gunther H. Weber; Peer-Timo Bremer; Marcus S. Day; John B. Bell; Valerio Pascucci (Topological Methods in Data Analysis and Visualization, 2011)

Interactive Exploration and Analysis of Large-Scale Simulations Using Topology-Based Data Segmentation. - Peer-Timo Bremer; Gunther H. Weber; Julien Tierny; Valerio Pascucci; Marcus S. Day; John B. Bell (IEEE Trans. Vis. Comput. Graph., 2011)

BoxLib with Tiling: An AMR Software Framework. - Weiqun Zhang; Ann S. Almgren; Marcus Day; Tan Nguyen 001; John Shalf; Didem Unat (CoRR, 2016)

BoxLib with Tiling: An Adaptive Mesh Refinement Software Framework. - Weiqun Zhang; Ann S. Almgren; Marcus Day; Tan Nguyen 001; John Shalf; Didem Unat (SIAM J. Sci. Comput., 2016)

Iterative Importance Sampling Algorithms for Parameter Estimation. - Matthias Morzfeld; Marcus S. Day; Ray W. Grout; George Shu Heng Pau; Stefan Finsterle; John B. Bell (SIAM J. Sci. Comput., 2018)

Surrogate Optimization of Computationally Expensive Black-Box Problems with Hidden Constraints. - Juliane Müller 002; Marcus Day (INFORMS J. Comput., 2019)

AMReX: a framework for block-structured adaptive mesh refinement. - Weiqun Zhang; Ann S. Almgren; Vincent E. Beckner; John B. Bell; Johannes P. Blaschke; Cy P. Chan; Marcus Day; Brian Friesen; Kevin Gott; Daniel T. Graves; Maximilian Katz; Andrew Myers 001; et al. (J. Open Source Softw., 2019)

Using Machine Learning to Augment Coarse-Grid Computational Fluid Dynamics Simulations. - Jaideep Pathak; Mustafa Mustafa; Karthik Kashinath; Emmanuel Motheau; Thorsten Kurth; Marcus Day (CoRR, 2020)

HYPPO: A Surrogate-Based Multi-Level Parallelism Tool for Hyperparameter Optimization. - Vincent Dumont; Casey Garner; Anuradha Trivedi; Chelsea Jones; Vidya Ganapati; Juliane Mueller 002; Talita Perciano; Mariam Kiran; Marc Day (MLHPC@SC, 2021)

ILUT Smoothers for Hybrid C-AMG with Scaled Triangular Factors. - Stephen J. Thomas; Arielle Carr; Kasia Swirydowicz; Marc Day (CoRR, 2021)

A moving embedded boundary approach for the compressible Navier-Stokes equations in a block-structured adaptive refinement framework. - Mahesh Natarajan; Ray W. Grout; Weiqun Zhang; Marcus S. Day (J. Comput. Phys., 2022)

Experiences readying applications for Exascale. - Nicholas Malaya; Bronson Messer; Joseph Glenski; Antigoni Georgiadou; Justin Lietz; Kalyana C. Gottiparthi; Marc Day; Jackie Chen; Jon S. Rood; Lucas Esclapez; James B. White III; Gustav R. Jansen; et al. (SC, 2023)

Experiences Readying Applications for Exascale. - Paul T. Bauman; Reuben D. Budiardja; Dmytro Bykov; Noel Chalmers; Jacqueline Chen; Nicholas Curtis; Marc Day; Markus Eisenbach 002; Lucas Esclapez; Alessandro Fanfarillo; William Freitag; Nicholas Frontiere; et al. (CoRR, 2023)

PeleC: An adaptive mesh refinement solver for compressible reacting flows. - Marc T. Henry de Frahan; Jon S. Rood; Marcus S. Day; Hariswaran Sitaraman; Shashank Yellapantula; Bruce A. Perry; Ray W. Grout; Ann S. Almgren; Weiqun Zhang; John B. Bell; Jacqueline H. Chen (Int. J. High Perform. Comput. Appl., 2023)

PeleLMeX: an AMR Low Mach Number Reactive Flow Simulation Code without level sub-cycling. - Lucas Esclapez; Marc Day; John Bell; Anne Felden; Candace Gilet; Ray W. Grout; Marc T. Henry de Frahan; Emmanuel Motheau; Andrew Nonaka; Landon Owen; Bruce A. Perry; Jon S. Rood; et al. (J. Open Source Softw., 2023)

The Pele Simulation Suite for Reacting Flows at Exascale. - Marc T. Henry de Frahan; Lucas Esclapez; Jon S. Rood; Nicholas T. Wimer; Paul Mullowney; Bruce A. Perry; Landon Owen; Hariswaran Sitaraman; Shashank Yellapantula; Malik Hassanaly; Mohammad J. Rahimi; Michael James Martin; et al. (PP, 2024)

SUNDIALS Time Integrators for Exascale Applications with Many Independent ODE Systems. - Cody J. Balos; Marc Day; Lucas Esclapez; Anne Felden; David J. Gardner; Malik Hassanaly; Daniel R. Reynolds; Jon S. Rood; Jean M. Sexton; Nicholas T. Wimer; Carol S. Woodward (CoRR, 2024)

Symbolic construction of the chemical Jacobian of quasi-steady state (QSS) chemistries for Exascale computing platforms. - Malik Hassanaly; Nicholas T. Wimer; Anne Felden; Lucas Esclapez; Julia Ream; Marc T. Henry de Frahan; Jon S. Rood; Marc Day (CoRR, 2024)

Adaptive Computing for Scale-Up Problems. - Kevin Patrick Griffin; Hilary Egan; Marc T. Henry de Frahan; Juliane Mueller 002; Deepthi Vaidhynathan; Dylan Wald; Rohit Chintala; Olga A. Doronina; Hariswaran Sitaraman; Ethan Young; Ryan King; Jibonananda Sanyal; et al. (Comput. Sci. Eng., 2025)

Accelerating Innovative Energy Solutions Using Combustion Simulations. - Shashank Yellapantula; Nicholas T. Wimer; Marc T. Henry de Frahan; Sreejith Nadakkal Appukuttan; Michael James Martin; Bruce A. Perry; Hariswaran Sitaraman; Mohammad J. Rahimi; Marc Day (Comput. Sci. Eng., 2025)

SUNDIALS time integrators for exascale applications with many independent systems of ordinary differential equations. - Cody J. Balos; Marcus Day; Lucas Esclapez; Anne M. Felden; David J. Gardner; Malik Hassanaly; Daniel R. Reynolds; Jon S. Rood; Jean M. Sexton; Nicholas T. Wimer; Carol S. Woodward (Int. J. High Perform. Comput. Appl., 2025)

Understanding Computational Science and Domain Science Skills Development in National Laboratory Graduate Internships. - Morgan M. Fong; Hilary Egan; Marc Day; Kristin Potter; Michael James Martin (CoRR, 2025)