Effects of confinement and crowding on folding of model proteins. - M. Wojciechowski; Marek Cieplak (Biosyst., 2008)

Mechanical Strength of 17 134 Model Proteins and Cysteine Slipknots. - Mateusz Sikora; Joanna I. Sulkowska; Marek Cieplak (PLoS Comput. Biol., 2009)

Protein Mechanics at the Single-Molecule Level. - Mariano Carrión-Vázquez; Marek Cieplak; Andrés F. Oberhauser (Encyclopedia of Complexity and Systems Science, 2009)

BSDB: the biomolecule stretching database. - Mateusz Sikora; Joanna I. Sulkowska; Bartlomiej S. Witkowski; Marek Cieplak (Nucleic Acids Res., 2011)

An Exploration of the Universe of Polyglutamine Structures. - Àngel Gómez-Sicilia; Mateusz Sikora; Marek Cieplak; Mariano Carrión-Vázquez (PLoS Comput. Biol., 2015)

Preliminary Study of Adhesive Properties of Surface Adsorbed Human Serum Albumin and Transforming Growth Factor-β Evaluated with AFM Force Spectroscopy. - Janusz Strzelecki; Anna Zawadzka; Marek Cieplak (ICTON, 2019)

Viscoelastic properties of wheat gluten in a molecular dynamics study. - Lukasz Mioduszewski; Marek Cieplak (PLoS Comput. Biol., 2021)

Contact-based molecular dynamics of structured and disordered proteins in a coarse-grained model: Fixed contacts, switchable contacts and those described by pseudo-improper-dihedral angles. - Lukasz Mioduszewski; Jakub Bednarz; Mateusz Chwastyk; Marek Cieplak (Comput. Phys. Commun., 2023)