Sequence-Structure-Function Relation Characterized in silico. - Michal Brylinski; Marek Kochanczyk; Leszek Konieczny; Irena Roterman (Silico Biol., 2006)

An approach to protein folding on the grid - EUChinaGrid experience. - Maciej Malawski; Tomasz Szepieniec; Marek Kochanczyk; Monika Piwowar; Irena Roterman (Bio Algorithms Med Syst., 2007)

Prediction of Functional Sites Based on the Fuzzy Oil Drop Model. - Michal Brylinski; Katarzyna Prymula; Wiktor Jurkowski; Marek Kochanczyk; Ewa Stawowczyk; Leszek Konieczny; Irena Roterman (PLoS Comput. Biol., 2007)

Ab initio protein structure prediction - the hydrophobicity distribution analysis. - Giuseppe Evangelista; Giovanni Minervini; Fabio Polticelli; Maciej Malawski; Tomasz Szepieniec; Lukasz Flis; Katarzyna Prymula; Marek Kochanczyk; Ewa Matczynska; Zdzislaw Wisniowski; Kinga Salapa; Mateusz Banach; et al. (Bio Algorithms Med Syst., 2011)

Levels of pro-apoptotic regulator Bad and anti-apoptotic regulator Bcl-xL determine the type of the apoptotic logic gate. - Marta N. Bogdal; Beata Hat; Marek Kochanczyk; Tomasz Lipniacki (BMC Syst. Biol., 2013)

Feedbacks, Bifurcations, and Cell Fate Decision-Making in the p53 System. - Beata Hat; Marek Kochanczyk; Marta N. Bogdal; Tomasz Lipniacki (PLoS Comput. Biol., 2016)

SPATKIN: a simulator for rule-based modeling of biomolecular site dynamics on surfaces. - Marek Kochanczyk; William S. Hlavacek; Tomasz Lipniacki (Bioinform., 2017)

The MAPK/ERK channel capacity exceeds 6 bit/hour. - Pawel Nalecz-Jawecki; Paolo Armando Gagliardi; Marek Kochanczyk; Coralie Dessauges; Olivier Pertz; Tomasz Lipniacki (PLoS Comput. Biol., 2023)

Information transmission in a cell monolayer: A numerical study. - Pawel Nalecz-Jawecki; Przemyslaw Szyc; Frederic Grabowski; Marek Kochanczyk; Tomasz Lipniacki (PLoS Comput. Biol., 2025)