Immune anomaly detection enhanced with evolutionary paradigms. - Marek Ostaszewski; Franciszek Seredynski; Pascal Bouvry (GECCO, 2006)

Network Traffic Analysis Using Immunological and Evolutionary Paradigms. - Marek Ostaszewski; Franciszek Seredynski; Pascal Bouvry (Intelligent Information Systems, 2006)

A nonself space approach to network anomaly detection. - Marek Ostaszewski; Franciszek Seredynski; Pascal Bouvry (IPDPS, 2006)

Coevolutionary-based Mechanisms for Network Anomaly Detection. - Marek Ostaszewski; Franciszek Seredynski; Pascal Bouvry (J. Math. Model. Algorithms, 2007)

An approach to intrusion detection by means of idiotypic networks paradigm. - Marek Ostaszewski; Pascal Bouvry; Franciszek Seredynski (IEEE Congress on Evolutionary Computation, 2008)

Denial of service detection and analysis using idiotypic networks paradigm. - Marek Ostaszewski; Pascal Bouvry; Franciszek Seredynski (GECCO, 2008)

Adaptive and dynamic intrusion detection by means of idiotypic networks paradigm. - Marek Ostaszewski; Pascal Bouvry; Franciszek Seredynski (IPDPS, 2008)

Multiobjective classification with moGEP: an application in the network traffic domain. - Marek Ostaszewski; Pascal Bouvry; Franciszek Seredynski (GECCO, 2009)

Visualization and classification of protein secondary structures using Self-Organizing Maps. - Christian Grévisse; Ian Muller; Juan Luis Jiménez Laredo; Marek Ostaszewski; Grégoire Danoy; Pascal Bouvry (MCDM, 2014)

Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases. - Venkata P. Satagopam; Wei Gu; Serge Eifes; Piotr Gawron; Marek Ostaszewski; Stephan Gebel; Adriano Barbosa-Silva; Rudi Balling; Reinhard Schneider 002 (Big Data, 2016)

Single and Multiobjective Evolutionary Algorithms for Clustering Biomedical Information with Unknown Number of Clusters. - María Eugenia Curi; Lucía Carozzi; Renzo Massobrio; Sergio Nesmachnow; Grégoire Danoy; Marek Ostaszewski; Pascal Bouvry (BIOMA, 2018)

MolArt: a molecular structure annotation and visualization tool. - David Hoksza; Piotr Gawron; Marek Ostaszewski; Reinhard Schneider 002 (Bioinform., 2018)

Clustering approaches for visual knowledge exploration in molecular interaction networks. - Marek Ostaszewski; Emmanuel Kieffer; Grégoire Danoy; Reinhard Schneider 002; Pascal Bouvry (BMC Bioinform., 2018)

Community-driven roadmap for integrated disease maps. - Marek Ostaszewski; Stephan Gebel; Inna Kuperstein; Alexander Mazein; Andrei Yu. Zinovyev; Ugur Dogrusoz; Jan Hasenauer; Ronan M. T. Fleming; Nicolas Le Novère; Piotr Gawron; Thomas S. Ligon; Anna Niarakis; et al. (Briefings Bioinform., 2019)

MINERVA API and plugins: opening molecular network analysis and visualization to the community. - David Hoksza; Piotr Gawron; Marek Ostaszewski; Ewa Smula; Reinhard Schneider 002 (Bioinform., 2019)

RA-map: building a state-of-the-art interactive knowledge base for rheumatoid arthritis. - Vidisha Singh; George D. Kalliolias; Marek Ostaszewski; Maëva Veyssiere; Eleftherios Pilalis; Piotr Gawron; Alexander Mazein; Eric Bonnet; Elisabeth Petit-Teixeira; Anna Niarakis (Database J. Biol. Databases Curation, 2020)

Closing the gap between formats for storing layout information in systems biology. - David Hoksza; Piotr Gawron; Marek Ostaszewski; Jan Hasenauer; Reinhard Schneider 002 (Briefings Bioinform., 2021)

Reusability and composability in process description maps: RAS-RAF-MEK-ERK signalling. - Alexander Mazein; Adrien Rougny; Jonathan R. Karr; Julio Saez-Rodriguez; Marek Ostaszewski; Reinhard Schneider 002 (Briefings Bioinform., 2021)

Setting the basis of best practices and standards for curation and annotation of logical models in biology - highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop. - Anna Niarakis; Martin Kuiper; Marek Ostaszewski; Rahuman S. Malik-Sheriff; Cristina Casals-Casas; Denis Thieffry; Tom C. Freeman; Paul D. Thomas; Vasundra Touré; Vincent Noël; Gautier Stoll; Julio Saez-Rodriguez; et al. (Briefings Bioinform., 2021)

Mechanistic modeling of the SARS-CoV-2 disease map. - Kinza Rian; Marina Esteban-Medina; Marta R. Hidalgo; Cankut Çubuk; Matias M. Falco; Carlos Loucera; Devrim Gunyel; Marek Ostaszewski; María Peña-Chilet; Joaquín Dopazo (BioData Min., 2021)

Machine Learning to Support the Presentation of Complex Pathway Graphs. - Sune S. Nielsen; Marek Ostaszewski; Fintan McGee; David Hoksza; Simone Zorzan (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Visualization of automatically combined disease maps and pathway diagrams for rare diseases. - Piotr Gawron; David Hoksza; Janet Piñero; María Peña-Chilet; Marina Esteban-Medina; Jose Luis Fernandez-Rueda; Vincenza Colonna; Ewa Smula; Laurent Heirendt; François Ancien; Valentin Grouès; Venkata P. Satagopam; et al. (Frontiers Bioinform., 2023)

Applications of Boolean modeling to study the dynamics of a complex disease and therapeutics responses. - Ahmed Abdelmonem Hemedan; Reinhard Schneider 002; Marek Ostaszewski (Frontiers Bioinform., 2023)

A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance. - Alexander Mazein; Marcio Luis Acencio; Irina Balaur; Adrien Rougny; Danielle Welter; Anna Niarakis; Diana Ramirez Ardila; Ugur Dogrusoz; Piotr Gawron; Venkata P. Satagopam; Wei Gu; Andreas Kremer; et al. (Frontiers Bioinform., 2023)

Graph databases in systems biology: a systematic review. - Ilya Mazein; Adrien Rougny; Alexander Mazein; Ron Henkel; Lea Gütebier; Lea Michaelis; Marek Ostaszewski; Reinhard Schneider 002; Venkata P. Satagopam; Lars Juhl Jensen; Dagmar Waltemath; Judith A. H. Wodke; et al. (Briefings Bioinform., 2024)

BioKC: a collaborative platform for curation and annotation of molecular interactions. - Carlos Vega; Marek Ostaszewski; Valentin Grouès; Reinhard Schneider 002; Venkata P. Satagopam (Database J. Biol. Databases Curation, 2024)