BCSearch: fast structural fragment mining over large collections of protein structures. - Frédéric Guyon; François Martz; Marek Vavrusa; Jérôme Bécot; Julien Rey; Pierre Tufféry (Nucleic Acids Res., 2015)

MTiOpenScreen: a web server for structure-based virtual screening. - Céline M. Labbé; Julien Rey; David Lagorce; Marek Vavrusa; Jérôme Bécot; Olivier Sperandio; Bruno O. Villoutreix; Pierre Tufféry; Maria A. Miteva (Nucleic Acids Res., 2015)

PEP-FOLD3: faster de novo structure prediction for linear peptides in solution and in complex. - Alexis Lamiable; Pierre Thévenet; Julien Rey; Marek Vavrusa; Philippe Derreumaux; Pierre Tufféry (Nucleic Acids Res., 2016)

InterEvDock: a docking server to predict the structure of protein-protein interactions using evolutionary information. - Jinchao Yu; Marek Vavrusa; Jessica Andreani; Julien Rey; Pierre Tufféry; Raphaël Guérois (Nucleic Acids Res., 2016)

Privileged Substructures to Modulate Protein-Protein Interactions. - Nicolas Bosc; Mélaine A. Kuenemann; Jérôme Bécot; Marek Vavrusa; Adrien H. Cerdan; Olivier Sperandio (J. Chem. Inf. Model., 2017)

Oblivious DNS over HTTPS (ODoH): A Practical Privacy Enhancement to DNS. - Sudheesh Singanamalla; Suphanat Chunhapanya; Marek Vavrusa; Tanya Verma; Peter Wu; Marwan Fayed; Kurtis Heimerl; Nick Sullivan; Christopher A. Wood (CoRR, 2020)

Oblivious DNS over HTTPS (ODoH): A Practical Privacy Enhancement to DNS. - Sudheesh Singanamalla; Suphanat Chunhapanya; Jonathan Hoyland; Marek Vavrusa; Tanya Verma; Peter Wu; Marwan Fayed; Kurtis Heimerl; Nick Sullivan; Christopher A. Wood (Proc. Priv. Enhancing Technol., 2021)