AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. - Lisa C. Harper; Jacqueline D. Campbell; Ethalinda K. S. Cannon; Sook Jung; Monica Poelchau; Ramona L. Walls; Carson M. Andorf; Elizabeth Arnaud; Tanya Z. Berardini; Clayton L. Birkett; Steven B. Cannon; James D. Carson; et al. (Database J. Biol. Databases Curation, 2018)

GrainGenes: centralized small grain resources and digital platform for geneticists and breeders. - Victoria C. Blake; Margaret Woodhouse; Gerard R. Lazo; Sarah G. Odell; Charlene P. Wight; Nicholas A Tinker; Yi Wang 052; Yong Q. Gu; Clayton L. Birkett; Jean-Luc Jannink; Dave E. Matthews; David L. Hane; et al. (Database J. Biol. Databases Curation, 2019)

MaizeGDB 2018: the maize multi-genome genetics and genomics database. - John L. Portwood II; Margaret Woodhouse; Ethalinda K. S. Cannon; Jack M. Gardiner; Lisa C. Harper; Mary L. Schaeffer; Jesse R. Walsh; Taner Z. Sen; Kyoung Tak Cho; David A. Schott; Bremen L. Braun; Miranda Dietze; et al. (Nucleic Acids Res., 2019)

FINDER: A fully automated pipeline to FIND accurate gene structures from proteins and RNA-Seq expression data. - Sagnik Banerjee; Margaret Woodhouse; Roger P. Wise; Priyanka Bhandary; Taner Z. Sen; Carson M. Andorf (BCB, 2020)

qTeller: a tool for comparative multi-genomic gene expression analysis. - Margaret Woodhouse; Shatabdi Sen; David A. Schott; John L. Portwood II; Michael Freeling; Justin W. Walley; Carson M. Andorf; James C. Schnable (Bioinform., 2021)

FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences. - Sagnik Banerjee; Priyanka Bhandary; Margaret Woodhouse; Taner Z. Sen; Roger P. Wise; Carson M. Andorf (BMC Bioinform., 2021)

Maize Feature Store: A centralized resource to manage and analyze curated maize multi-omics features for machine learning applications. - Shatabdi Sen; Margaret Woodhouse; John L. Portwood II; Carson M. Andorf (Database J. Biol. Databases Curation, 2023)

PanEffect: a pan-genome visualization tool for variant effects in maize. - Carson M. Andorf; Olivia C. Haley; Rita K. Hayford; John L. Portwood II; Stephen Harding; Shatabdi Sen; Ethalinda K. S. Cannon; Jack M. Gardiner; Hye-Seon Kim; Margaret Woodhouse (Bioinform., 2024)