A Machine Learning Pipeline for Discriminant Pathways Identification. - Annalisa Barla; Giuseppe Jurman; Roberto Visintainer; Margherita Squillario; Michele Filosi; Samantha Riccadonna; Cesare Furlanello (CIBB, 2011)

Discriminant functional gene groups identification with machine learning and prior knowledge. - Grzegorz Zycinski; Margherita Squillario; Annalisa Barla; Tiziana Sanavia; Alessandro Verri; Barbara Di Camillo (ESANN, 2012)

Identification of Pathway Signatures in Parkinson's Disease with Gene Ontology and Sparse Regularization. - Margherita Squillario; Grzegorz Zycinski; Annalisa Barla; Alessandro Verri (CIBB, 2013)

Knowledge Driven Variable Selection (KDVS) - a new approach to enrichment analysis of gene signatures obtained from high-throughput data. - Grzegorz Zycinski; Annalisa Barla; Margherita Squillario; Tiziana Sanavia; Barbara Di Camillo; Alessandro Verri (Source Code Biol. Medicine, 2013)

Adenine: A HPC-Oriented Tool for Biological Data Exploration. - Samuele Fiorini; Federico Tomasi; Margherita Squillario; Annalisa Barla (CIBB, 2017)

Icing: Large-Scale Inference of Immunoglobulin Clonotypes. - Federico Tomasi; Margherita Squillario; Alessandro Verri; Davide Bagnara; Annalisa Barla (CIBB, 2017)

Group induced graphical lasso allows for discovery of molecular pathways-pathways interactions. - Veronica Tozzo; Federico Tomasi; Margherita Squillario; Annalisa Barla (CoRR, 2018)

An Overview of Data Integration in Neuroscience With Focus on Alzheimer's Disease. - Rosanna Turrisi; Margherita Squillario; Giulia Abate; Daniela Letizia Uberti; Annalisa Barla (IEEE J. Biomed. Health Informatics, 2024)