Parallel Bi-dimensional Pattern Matching with Scaling. - Marghoob Mohiyuddin; Vidit Jain; Phalguni Gupta (IASTED PDCS, 2002)

Synthesizing interconnect-efficient low density parity check codes. - Marghoob Mohiyuddin; Amit Prakash; Adnan Aziz; Wayne H. Wolf (DAC, 2004)

Scheduling Traffic Matrices On General Switch Fabrics. - Xiang Wu; Amit Prakash; Marghoob Mohiyuddin; Adnan Aziz (Hot Interconnects, 2006)

Avoiding communication in sparse matrix computations. - James Demmel; Mark Hoemmen; Marghoob Mohiyuddin; Katherine A. Yelick (IPDPS, 2008)

Analysis of photonic networks for a chip multiprocessor using scientific applications. - Gilbert Hendry; Shoaib Kamil 001; Aleksandr Biberman; Johnnie Chan; Benjamin G. Lee; Marghoob Mohiyuddin; Ankit Jain; Keren Bergman; Luca P. Carloni; John Kubiatowicz; Leonid Oliker; John Shalf (NOCS, 2009)

Minimizing communication in sparse matrix solvers. - Marghoob Mohiyuddin; Mark Hoemmen; James Demmel; Katherine A. Yelick (SC, 2009)

A design methodology for domain-optimized power-efficient supercomputing. - Marghoob Mohiyuddin; Mark Murphy; Leonid Oliker; John Shalf; John Wawrzynek; Samuel Williams 001 (SC, 2009)

Energy-Efficient Computing for Extreme-Scale Science. - David Donofrio; Leonid Oliker; John Shalf; Michael F. Wehner; Chris Rowen; Jens Krueger; Shoaib Kamil 001; Marghoob Mohiyuddin (Computer, 2009)

Hardware/software co-design for energy-efficient seismic modeling. - Jens Krueger; David Donofrio; John Shalf; Marghoob Mohiyuddin; Samuel Williams 001; Leonid Oliker; Franz-Josef Pfreundt (SC, 2011)

Fast and accurate read alignment for resequencing. - John C. Mu; Hui Jiang 002; Amirhossein Kiani; Marghoob Mohiyuddin; Narges Bani Asadi; Wing Hung Wong (Bioinform., 2012)

Tuning Hardware and Software for Multiprocessors. - Marghoob Mohiyuddin (2012)

MetaSV: an accurate and integrative structural-variant caller for next generation sequencing. - Marghoob Mohiyuddin; John C. Mu; Jian Li; Narges Bani Asadi; Mark B. Gerstein; Alexej Abyzov; Wing H. Wong; Hugo Y. K. Lam (Bioinform., 2015)

VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications. - John C. Mu; Marghoob Mohiyuddin; Jian Li; Narges Bani Asadi; Mark B. Gerstein; Alexej Abyzov; Wing H. Wong; Hugo Y. K. Lam (Bioinform., 2015)

LongISLND: in silico sequencing of lengthy and noisy datatypes. - Bayo Lau; Marghoob Mohiyuddin; John C. Mu; Li Tai Fang; Narges Bani Asadi; Carolina Dallett; Hugo Y. K. Lam (Bioinform., 2016)