An MDL Method for Finding Haplotype Blocks and for Estimating the Strength of Haplotype Block Boundaries. - Mikko Koivisto; Markus Perola; T. Varilo; W. Hennah; J. Ekelund; Margus Lukk; L. Peltonen; Esko Ukkonen; Heikki Mannila (Pacific Symposium on Biocomputing, 2003)

ArrayExpress - a public database of microarray experiments and gene expression profiles. - Helen E. Parkinson; Misha Kapushesky; Mohammadreza Shojatalab; Niran Abeygunawardena; Richard Coulson; Anna Farne; Ele Holloway; Nikolay Kolesnykov; P. Lilja; Margus Lukk; Roby Mani; Tim F. Rayner; et al. (Nucleic Acids Res., 2007)

Importing ArrayExpress datasets into R/Bioconductor. - Audrey Kauffmann; Tim F. Rayner; Helen E. Parkinson; Misha Kapushesky; Margus Lukk; Alvis Brazma; Wolfgang Huber (Bioinform., 2009)

MAGETabulator, a suite of tools to support the microarray data format MAGE-TAB. - Tim F. Rayner; Faisal Ibne Rezwan; Margus Lukk; Xiangqun Zheng Bradley; Anna Farne; Ele Holloway; James Malone; Eleanor Williams; Helen E. Parkinson (Bioinform., 2009)

ArrayExpress update - from an archive of functional genomics experiments to the atlas of gene expression. - Helen E. Parkinson; Misha Kapushesky; Nikolay Kolesnikov; Gabriella Rustici; Mohammadreza Shojatalab; Niran Abeygunawardena; Hugo Bérubé; Miroslaw Dylag; Ibrahim Emam; Anna Farne; Ele Holloway; Margus Lukk; et al. (Nucleic Acids Res., 2009)

Assessments of Affymetrix GeneChip Microarray Quality for Laboratories and Single Samples. - Matthew N. McCall; Peter N. Murakami; Margus Lukk; Wolfgang Huber; Rafael A. Irizarry (BMC Bioinform., 2011)

ArrayExpress update - an archive of microarray and high-throughput sequencing-based functional genomics experiments. - Helen E. Parkinson; Ugis Sarkans; Nikolay Kolesnikov; Niran Abeygunawardena; Tony Burdett; Miroslaw Dylag; Ibrahim Emam; Anna Farne; Emma Hastings; Ele Holloway; Natalja Kurbatova; Margus Lukk; et al. (Nucleic Acids Res., 2011)

MageComet - web application for harmonizing existing large-scale experiment descriptions. - Vincent Xue; Tony Burdett; Margus Lukk; Julie Taylor; Alvis Brazma; Helen E. Parkinson (Bioinform., 2012)

Crisflash: open-source software to generate CRISPR guide RNAs against genomes annotated with individual variation. - Adrien L. S. Jacquin; Duncan T. Odom; Margus Lukk (Bioinform., 2019)