BION web server: predicting non-specifically bound surface ions. - Marharyta Petukh; Taylor Kimmet; Emil Alexov (Bioinform., 2013)

Research and applications: A rational free energy-based approach to understanding and targeting disease-causing missense mutations. - Zhe Zhang; Shawn Witham; Marharita Petukh; Gautier Moroy; Maria A. Miteva; Yoshihiko Ikeguchi; Emil Alexov (J. Am. Medical Informatics Assoc., 2013)

Continuous development of schemes for parallel computing of the electrostatics in biological systems: Implementation in DelPhi. - Chuan Li 003; Marharyta Petukh; Lin Li 003; Emil Alexov (J. Comput. Chem., 2013)

ProBLM Web Server: Protein and Membrane Placement and Orientation Package. - Taylor Kimmet; Nicholas Smith; Shawn Witham; Marharyta Petukh; Subhra Sarkar; Emil Alexov (Comput. Math. Methods Medicine, 2014)

Statistical investigation of surface bound ions and further development of BION server to include pH and salt dependence. - Marharyta Petukh; Min Zhang; Emil Alexov (J. Comput. Chem., 2015)

Predicting Binding Free Energy Change Caused by Point Mutations with Knowledge-Modified MM/PBSA Method. - Marharyta Petukh; Minghui Li; Emil Alexov (PLoS Comput. Biol., 2015)

DelPhi Suite: New Developments and Review of Functionalities. - Chuan Li 003; Zhe Jia; Arghya Chakravorty; Swagata Pahari; Yunhui Peng; Sankar Basu; Mahesh Koirala; Shailesh Kumar Panday; Marharyta Petukh; Lin Li 003; Emil Alexov (J. Comput. Chem., 2019)