Evaluating different methods of microarray data normalization. - André Fujita; João Ricardo Sato; Leonardo de Oliveira Rodrigues; Carlos Eduardo Ferreira; Mari Cleide Sogayar (BMC Bioinform., 2006)

Time-varying modeling of gene expression regulatory networks using the wavelet dynamic vector autoregressive method. - André Fujita; João Ricardo Sato; Humberto Miguel Garay-Malpartida; Pedro Alberto Morettin; Mari Cleide Sogayar; Carlos Eduardo Ferreira (Bioinform., 2007)

GEDI: a user-friendly toolbox for analysis of large-scale gene expression data. - André Fujita; João Ricardo Sato; Carlos Eduardo Ferreira; Mari Cleide Sogayar (BMC Bioinform., 2007)

Modeling gene expression regulatory networks with the sparse vector autoregressive model. - André Fujita; João Ricardo Sato; Humberto Miguel Garay-Malpartida; Rui Yamaguchi; Satoru Miyano; Mari Cleide Sogayar; Carlos Eduardo Ferreira (BMC Syst. Biol., 2007)

Multivariate gene expression analysis reveals functional connectivity changes between normal/tumoral prostates. - André Fujita; Luciana Rodrigues Gomes; João Ricardo Sato; Rui Yamaguchi; Carlos E. Thomaz; Mari Cleide Sogayar; Satoru Miyano (BMC Syst. Biol., 2008)

Modeling Nonlinear Gene Regulatory Networks from Time Series Gene Expression Data. - André Fujita; João Ricardo Sato; Humberto Miguel Garay-Malpartida; Mari Cleide Sogayar; Carlos Eduardo Ferreira; Satoru Miyano (J. Bioinform. Comput. Biol., 2008)

Comparing Pearson, Spearman and Hoeffding's d Measure for Gene Expression Association Analysis. - André Fujita; João Ricardo Sato; Marcos Angelo Almeida Demasi; Mari Cleide Sogayar; Carlos Eduardo Ferreira; Satoru Miyano (J. Bioinform. Comput. Biol., 2009)

Identification of Granger Causality between Gene Sets. - André Fujita; João Ricardo Sato; Kaname Kojima; Luciana Rodrigues Gomes; Masao Nagasaki; Mari Cleide Sogayar; Satoru Miyano (J. Bioinform. Comput. Biol., 2010)

Inferring Contagion in Regulatory Networks. - André Fujita; João Ricardo Sato; Marcos Angelo Almeida Demasi; Rui Yamaguchi; Teppei Shimamura; Carlos Eduardo Ferreira; Mari Cleide Sogayar; Satoru Miyano (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)