PCE: web tools to compute protein continuum electrostatics. - Maria A. Miteva; Pierre Tufféry; Bruno O. Villoutreix (Nucleic Acids Res., 2005)

FAF-Drugs: free ADME/tox filtering of compound collections. - Maria A. Miteva; Stephanie Violas; Matthieu Montès; David Gomez; Pierre Tufféry; Bruno O. Villoutreix (Nucleic Acids Res., 2006)

MED-SuMoLig: A New Ligand-Based Screening Tool for Efficient Scaffold Hopping. - Olivier Sperandio; Olivier Andrieu; Maria A. Miteva; Minh-Quang Vo; Marc Souaille; François Delfaud; Bruno O. Villoutreix (J. Chem. Inf. Model., 2007)

Frog: a FRee Online druG 3D conformation generator. - T. Bohme Leite; D. Gomes; Maria A. Miteva; Jacques Chomilier; Bruno O. Villoutreix; Pierre Tufféry (Nucleic Acids Res., 2007)

FAF-Drugs2: Free ADME/tox filtering tool to assist drug discovery and chemical biology projects. - David Lagorce; Olivier Sperandio; Hervé Galons; Maria A. Miteva; Bruno O. Villoutreix (BMC Bioinform., 2008)

AMMOS: Automated Molecular Mechanics Optimization tool for in silico Screening. - Tania Pencheva; David Lagorce; Ilza Pajeva; Bruno O. Villoutreix; Maria A. Miteva (BMC Bioinform., 2008)

MS-DOCK: Accurate multiple conformation generator and rigid docking protocol for multi-step virtual ligand screening. - Nicolas Sauton; David Lagorce; Bruno O. Villoutreix; Maria A. Miteva (BMC Bioinform., 2008)

Receptor-Based Virtual Ligand Screening for the Identification of Novel CDC25 Phosphatase Inhibitors. - Matthieu Montès; Emmanuelle Braud; Maria A. Miteva; Mary-Lorène Goddard; Odile Mondésert; Stéphanie Kolb; Marie-Priscille Brun; Bernard Ducommun; Christiane Garbay; Bruno O. Villoutreix (J. Chem. Inf. Model., 2008)

Frog2: Efficient 3D conformation ensemble generator for small compounds. - Maria A. Miteva; Frédéric Guyon; Pierre Tufféry (Nucleic Acids Res., 2010)

The FAF-Drugs2 server: a multistep engine to prepare electronic chemical compound collections. - David Lagorce; Julien Maupetit; Jonathan B. Baell; Olivier Sperandio; Pierre Tufféry; Maria A. Miteva; Hervé Galons; Bruno O. Villoutreix (Bioinform., 2011)

Analyzing Effects of Naturally Occurring Missense Mutations. - Zhe Zhang; Maria A. Miteva; Lin Wang; Emil Alexov (Comput. Math. Methods Medicine, 2012)

Research and applications: A rational free energy-based approach to understanding and targeting disease-causing missense mutations. - Zhe Zhang; Shawn Witham; Marharita Petukh; Gautier Moroy; Maria A. Miteva; Yoshihiko Ikeguchi; Emil Alexov (J. Am. Medical Informatics Assoc., 2013)

Integrated structure- and ligand-based in silico approach to predict inhibition of cytochrome P450 2D6. - Virginie Y. Martiny; Pablo Carbonell; Florent Chevillard; Gautier Moroy; Arnaud B. Nicot; Philippe Vayer; Bruno O. Villoutreix; Maria A. Miteva (Bioinform., 2015)

MTiOpenScreen: a web server for structure-based virtual screening. - Céline M. Labbé; Julien Rey; David Lagorce; Marek Vavrusa; Jérôme Bécot; Olivier Sperandio; Bruno O. Villoutreix; Pierre Tufféry; Maria A. Miteva (Nucleic Acids Res., 2015)

FAF-Drugs3: a web server for compound property calculation and chemical library design. - David Lagorce; Olivier Sperandio; Jonathan B. Baell; Maria A. Miteva; Bruno O. Villoutreix (Nucleic Acids Res., 2015)

iPPI-DB: an online database of modulators of protein-protein interactions. - Céline M. Labbé; Mélaine A. Kuenemann; Barbara Zarzycka; Gert Vriend; Gerry A. F. Nicolaes; David Lagorce; Maria A. Miteva; Bruno O. Villoutreix; Olivier Sperandio (Nucleic Acids Res., 2016)

FAF-Drugs4: free ADME-tox filtering computations for chemical biology and early stages drug discovery. - David Lagorce; Lina Bouslama; Jérôme Bécot; Maria A. Miteva; Bruno O. Villoutreix (Bioinform., 2017)

AMMOS2: a web server for protein-ligand-water complexes refinement via molecular mechanics. - Céline M. Labbé; Tania Pencheva; Dessislava Jereva; Dimitri Desvillechabrol; Jérôme Bécot; Bruno O. Villoutreix; Ilza Pajeva; Maria A. Miteva (Nucleic Acids Res., 2017)

InterCriteria Analysis Approach for Decision-Making in Virtual Screening: Comparative Study of Various Scoring Functions. - Dessislava Jereva; Maria Angelova; Ivanka Tsakovska; Petko Alov; Ilza Pajeva; Maria A. Miteva; Tania Pencheva (BioInfoMed, 2020)

Machine learning-driven identification of drugs inhibiting cytochrome P450 2C9. - Elodie Goldwaser; Catherine Laurent; Nathalie Lagarde; Sylvie Fabrega; Laure Nay; Bruno O. Villoutreix; Christian Jelsch; Arnaud B. Nicot; Marie-Anne Loriot; Maria A. Miteva (PLoS Comput. Biol., 2022)