SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments. - Paolo Di Tommaso; Giovanni Bussotti; Carsten Kemena; Emidio Capriotti; Maria Chatzou; Pablo Prieto; Cédric Notredame (Nucleic Acids Res., 2014)

Multiple sequence alignment modeling: methods and applications. - Maria Chatzou; Cedrik Magis; Jia-Ming Chang; Carsten Kemena; Giovanni Bussotti; Ionas Erb; Cédric Notredame (Briefings Bioinform., 2016)

PSI/TM-Coffee: a web server for fast and accurate multiple sequence alignments of regular and transmembrane proteins using homology extension on reduced databases. - Evan W. Floden; Paolo Di Tommaso; Maria Chatzou; Cedrik Magis; Cédric Notredame; Jia-Ming Chang (Nucleic Acids Res., 2016)