The Sleipnir library for computational functional genomics. - Curtis Huttenhower; Mark Schroeder; Maria D. Chikina; Olga G. Troyanskaya (Bioinform., 2008)

Global Prediction of Tissue-Specific Gene Expression and Context-Dependent Gene Networks in Caenorhabditis elegans. - Maria D. Chikina; Curtis Huttenhower; Coleen T. Murphy; Olga G. Troyanskaya (PLoS Comput. Biol., 2009)

Accurate Quantification of Functional Analogy among Close Homologs. - Maria D. Chikina; Olga G. Troyanskaya (PLoS Comput. Biol., 2011)

An effective statistical evaluation of ChIPseq dataset similarity. - Maria D. Chikina; Olga G. Troyanskaya (Bioinform., 2012)

Hybrid Bayesian-rank integration approach improves the predictive power of genomic dataset aggregation. - Marcus A. Badgeley; Stuart C. Sealfon; Maria D. Chikina (Bioinform., 2015)

CellCODE: a robust latent variable approach to differential expression analysis for heterogeneous cell populations. - Maria D. Chikina; Elena Zaslavsky; Stuart C. Sealfon (Bioinform., 2015)