Segmentation of Brain MRI in Young Children. - Maria Murgasova; Leigh Dyet; A. David Edwards; Mary A. Rutherford; Joseph V. Hajnal; Daniel Rueckert (MICCAI (1), 2006)

Groupwise Combined Segmentation and Registration for Atlas Construction. - Kanwal K. Bhatia; Paul Aljabar; James P. Boardman; Latha Srinivasan; Maria Murgasova; Serena J. Counsell; Mary A. Rutherford; Joseph V. Hajnal; A. David Edwards; Daniel Rueckert (MICCAI (1), 2007)

Quantifying brain development in early childhood using segmentation and registration. - Paul Aljabar; Kanwal K. Bhatia; Maria Murgasova; Joseph V. Hajnal; James P. Boardman; Latha Srinivasan; Mary A. Rutherford; Leigh Dyet; A. David Edwards; Daniel Rueckert (Image Processing, 2007)

Robust segmentation of brain MRI using combination of registration and EM-based methods. - Maria Murgasova; Leigh Dyet; Joseph V. Hajnal; Mary A. Rutherford; A. David Edwards; Daniel Rueckert (SCCG, 2007)

Assessment of brain growth in early childhood using deformation-based morphometry. - Paul Aljabar; Kanwal K. Bhatia; Maria Murgasova; Joseph V. Hajnal; James P. Boardman; Latha Srinivasan; Mary A. Rutherford; Leigh Dyet; A. David Edwards; Daniel Rueckert (NeuroImage, 2008)

Robust Segmentation of Brain Structures in MRI. - Maria Murgasova; A. David Edwards; Joseph V. Hajnal; Daniel Rueckert (ISBI, 2009)

Construction of a dynamic 4D probabilistic atlas for the developing brain. - Maria Murgasova; Latha Srinivasan; Ioannis S. Gousias; Paul Aljabar; Joseph V. Hajnal; A. David Edwards; Daniel Rueckert (ISBI, 2010)

Simultaneous Reconstruction of 4-D Myocardial Motion from Both Tagged and Untagged MR Images Using Nonrigid Image Registration. - Wenzhe Shi; Maria Murgasova; Philip J. Edwards; Daniel Rueckert (MIAR, 2010)

Combining Morphological Information in a Manifold Learning Framework: Application to Neonatal MRI. - Paul Aljabar; Robin Wolz; Latha Srinivasan; Serena J. Counsell; James P. Boardman; Maria Murgasova; Valentina Doria; Mary A. Rutherford; A. David Edwards; Joseph V. Hajnal (MICCAI (3), 2010)

Large Deformation Diffeomorphic Registration Using Fine and Coarse Strategies. - Laurent Risser; François-Xavier Vialard; Maria Murgasova; Darryl D. Holm; Daniel Rueckert (WBIR, 2010)

Brain Extraction Methods for Neonates. - Ziyue Wu; Maria Murgasova; Andreas Buchmann; Michael von Rhein; Julia A. Schnabel (MIUA, 2011)

A dynamic 4D probabilistic atlas of the developing brain. - Maria Kuklisova-Murgasova; Paul Aljabar; Latha Srinivasan; Serena J. Counsell; Valentina Doria; Ahmed Serag; Ioannis S. Gousias; James P. Boardman; Mary A. Rutherford; A. David Edwards; Joseph V. Hajnal; Daniel Rueckert (NeuroImage, 2011)

Simultaneous Multi-scale Registration Using Large Deformation Diffeomorphic Metric Mapping. - Laurent Risser; François-Xavier Vialard; Robin Wolz; Maria Murgasova; Darryl D. Holm; Daniel Rueckert (IEEE Trans. Medical Imaging, 2011)

Towards 3D registration of fetal brain MRI and ultrasound. - Maria Kuklisova-Murgasova; Gerardine Quaghebeur; Joseph V. Hajnal; J. Alison Noble; Julia A. Schnabel (ISBI, 2012)

Registration of 3D Fetal Brain US and MRI. - Maria Kuklisova-Murgasova; Amalia Cifor; Raffaele Napolitano; Aris T. Papageorghiou; Gerardine Quaghebeur; J. Alison Noble; Julia A. Schnabel (MICCAI (2), 2012)

Reconstruction of fetal brain MRI with intensity matching and complete outlier removal. - Maria Kuklisova-Murgasova; Gerardine Quaghebeur; Mary A. Rutherford; Joseph V. Hajnal; Julia A. Schnabel (Medical Image Anal., 2012)

Registration of 3D fetal neurosonography and MRI. - Maria Kuklisova-Murgasova; Amalia Cifor; Raffaele Napolitano; Aris T. Papageorghiou; Gerardine Quaghebeur; Mary A. Rutherford; Joseph V. Hajnal; J. Alison Noble; Julia A. Schnabel (Medical Image Anal., 2013)

Motion Corrected 3D Reconstruction of the Fetal Thorax from Prenatal MRI. - Bernhard Kainz; Christina Malamateniou; Maria Murgasova; Kevin Keraudren; Mary A. Rutherford; Joseph V. Hajnal; Daniel Rueckert (MICCAI (2), 2014)

Construction of a 4D Brain Atlas and Growth Model Using Diffeomorphic Registration. - Andreas Schuh; Maria Murgasova; Antonios Makropoulos; Christian Ledig; Serena J. Counsell; Joseph V. Hajnal; Paul Aljabar; Daniel Rueckert (STIA, 2014)

A 4D neonatal head model for diffuse optical imaging of pre-term to term infants. - Sabrina Brigadoi; Paul Aljabar; Maria Kuklisova-Murgasova; Simon R. Arridge; Robert J. Cooper (NeuroImage, 2014)

Resting State fMRI in the moving fetus: A robust framework for motion, bias field and spin history correction. - Giulio Ferrazzi; Maria Kuklisova-Murgasova; Tomoki Arichi; Christina Malamateniou; Matthew J. Fox; Antonios Makropoulos; Joanna M. Allsop; Mary A. Rutherford; Shaihan J. Malik; Paul Aljabar; Joseph V. Hajnal (NeuroImage, 2014)

Automated fetal brain segmentation from 2D MRI slices for motion correction. - Kevin Keraudren; Maria Kuklisova-Murgasova; Vanessa Kyriakopoulou; Christina Malamateniou; Mary A. Rutherford; Bernhard Kainz; Joseph V. Hajnal; Daniel Rueckert (NeuroImage, 2014)

Adaptive scan strategies for fetal MRI imaging using slice to volume techniques. - Bernhard Kainz; Christina Malamateniou; Giulio Ferrazzi; Maria Murgasova; Jan Egger; Kevin Keraudren; Mary A. Rutherford; Joseph V. Hajnal; Daniel Rueckert (ISBI, 2015)

Evaluation of automatic neonatal brain segmentation algorithms: The NeoBrainS12 challenge. - Ivana Isgum; Manon J. N. L. Benders; Brian B. Avants; Manuel Jorge Cardoso; Serena J. Counsell; Elda Fischi Gomez; Laura Gui; Petra S. Hüppi; Karina J. Kersbergen; Antonios Makropoulos; Andrew Melbourne; Pim Moeskops; et al. (Medical Image Anal., 2015)

Fast Volume Reconstruction From Motion Corrupted Stacks of 2D Slices. - Bernhard Kainz; Markus Steinberger; Wolfgang Wein; Maria Kuklisova-Murgasova; Christina Malamateniou; Kevin Keraudren; Thomas Torsney-Weir; Mary A. Rutherford; Paul Aljabar; Joseph V. Hajnal; Daniel Rueckert (IEEE Trans. Medical Imaging, 2015)

Distortion correction in fetal EPI using non-rigid registration with Laplacian constraint. - Maria Murgasova; Georgia Lockwood Estrin; Mary A. Rutherford; Daniel Rueckert; Joseph V. Hajnal (ISBI, 2016)

Regression analysis for assessment of myelination status in preterm brains with magnetic resonance imaging. - Siying Wang 004; Maria Kuklisova-Murgasova; Joseph V. Hajnal; Christian Ledig; Julia A. Schnabel (ISBI, 2016)

High-Performance Motion Correction of Fetal MRI. - Bernhard Kainz; David F. A. Lloyd; Amir Alansary; Maria Kuklisova-Murgasova; Rostislav Khlebnikov; Daniel Rueckert; Mary A. Rutherford; Reza Razavi; Joseph V. Hajnal (EuroRV³@EuroVis, 2016)

Dynamic Field Mapping and Motion Correction Using Interleaved Double Spin-Echo Diffusion MRI. - Jana Hutter; Daan Christiaens; Maria Deprez; Lucilio Cordero-Grande; Paddy Slator; Anthony Price; Mary A. Rutherford; Joseph V. Hajnal (MICCAI (1), 2017)

PVR: Patch-to-Volume Reconstruction for Large Area Motion Correction of Fetal MRI. - Amir Alansary; Martin Rajchl; Steven G. McDonagh 001; Maria Murgasova; Mellisa Damodaram; David F. A. Lloyd; Alice Davidson; Mary A. Rutherford; Joseph V. Hajnal; Daniel Rueckert; Bernhard Kainz (IEEE Trans. Medical Imaging, 2017)

Slice-level diffusion encoding for motion and distortion correction. - Jana Hutter; Daan Christiaens; Torben Schneider; Lucilio Cordero-Grande; Paddy Slator; Maria Deprez; Anthony N. Price; Jacques-Donald Tournier; Mary A. Rutherford; Joseph V. Hajnal (Medical Image Anal., 2018)

Distortion Correction in Fetal EPI Using Non-Rigid Registration With a Laplacian Constraint. - Maria Kuklisova-Murgasova; Georgia Lockwood Estrin; Rita Gouveia Nunes; Shaihan J. Malik; Mary A. Rutherford; Daniel Rueckert; Joseph V. Hajnal (IEEE Trans. Medical Imaging, 2018)

Investigating Image Registration Impact on Preterm Birth Classification: An Interpretable Deep Learning Approach. - Irina Grigorescu; Lucilio Cordero-Grande; A. David Edwards; Joseph V. Hajnal; Marc Modat; Maria Deprez (SUSI/PIPPI@MICCAI, 2019)

Self-supervised Recurrent Neural Network for 4D Abdominal and In-utero MR Imaging. - Tong Zhang 017; Laurence H. Jackson; Alena Uus; James R. Clough; Lisa Story; Mary A. Rutherford; Joseph V. Hajnal; Maria Deprez (MLMIR@MICCAI, 2019)

Automated processing pipeline for neonatal diffusion MRI in the developing Human Connectome Project. - Matteo Bastiani; Jesper L. R. Andersson; Lucilio Cordero-Grande; Maria Murgasova; Jana Hutter; Anthony N. Price; Antonios Makropoulos; Sean P. Fitzgibbon; Emer J. Hughes; Daniel Rueckert; Suresh Victor; Mary A. Rutherford; et al. (NeuroImage, 2019)

Learning Compact ${q}$ -Space Representations for Multi-Shell Diffusion-Weighted MRI. - Daan Christiaens; Lucilio Cordero-Grande; Jana Hutter; Anthony N. Price; Maria Deprez; Joseph V. Hajnal; Jacques-Donald Tournier (IEEE Trans. Medical Imaging, 2019)

Harmonised Segmentation of Neonatal Brain MRI: A Domain Adaptation Approach. - Irina Grigorescu; Lucilio Cordero-Grande; Dafnis Batalle; A. David Edwards; Joseph V. Hajnal; Marc Modat; Maria Deprez (ASMUS/PIPPI@MICCAI, 2020)

Deformable Slice-to-Volume Registration for Reconstruction of Quantitative T2* Placental and Fetal MRI. - Alena Uus; Johannes K. Steinweg; Alison Ho; Laurence H. Jackson; Joseph V. Hajnal; Mary A. Rutherford; Maria Deprez; Jana Hutter (ASMUS/PIPPI@MICCAI, 2020)

Diffusion Tensor Driven Image Registration: A Deep Learning Approach. - Irina Grigorescu; Alena Uus; Daan Christiaens; Lucilio Cordero-Grande; Jana Hutter; A. David Edwards; Joseph V. Hajnal; Marc Modat; Maria Deprez (WBIR, 2020)

Multi-channel Registration for Diffusion MRI: Longitudinal Analysis for the Neonatal Brain. - Alena Uus; Maximilian Pietsch; Irina Grigorescu; Daan Christiaens; Jacques-Donald Tournier; Lucilio Cordero-Grande; Jana Hutter; A. David Edwards; Joseph V. Hajnal; Maria Deprez (WBIR, 2020)

Higher Order Spherical Harmonics Reconstruction of Fetal Diffusion MRI With Intensity Correction. - Maria Deprez; Anthony Price; Daan Christiaens; Georgia Lockwood Estrin; Lucilio Cordero-Grande; Jana Hutter; Alessandro Daducci; Jacques-Donald Tournier; Mary A. Rutherford; Serena J. Counsell; Meritxell Bach Cuadra; Joseph V. Hajnal (IEEE Trans. Medical Imaging, 2020)

Deformable Slice-to-Volume Registration for Motion Correction of Fetal Body and Placenta MRI. - Alena Uus; Tong Zhang 017; Laurence H. Jackson; Thomas A. Roberts; Mary A. Rutherford; Joseph V. Hajnal; Maria Deprez (IEEE Trans. Medical Imaging, 2020)

Uncertainty-Aware Deep Learning Based Deformable Registration. - Irina Grigorescu; Alena Uus; Daan Christiaens; Lucilio Cordero-Grande; Jana Hutter; Dafnis Batalle; A. David Edwards; Joseph V. Hajnal; Marc Modat; Maria Deprez (UNSURE/PIPPI@MICCAI, 2021)

Spatio-Temporal Atlas of Normal Fetal Craniofacial Feature Development and CNN-Based Ocular Biometry for Motion-Corrected Fetal MRI. - Alena Uus; Jacqueline Matthew; Irina Grigorescu; Samuel Jupp; Lucilio Cordero-Grande; Anthony Price; Emer J. Hughes; Prachi A. Patkee; Vanessa Kyriakopoulou; Robert Wright; Thomas A. Roberts; Jana Hutter; et al. (UNSURE/PIPPI@MICCAI, 2021)

Fetal MRI by robust deep generative prior reconstruction and diffeomorphic registration: application to gestational age prediction. - Lucilio Cordero-Grande; Juan Enrique Ortuño Fisac; Alena Uus; Maria Deprez; Andrés Santos; Joseph V. Hajnal; María-Jesus Ledesma-Carbayo (CoRR, 2021)

Scattered slice SHARD reconstruction for motion correction in multi-shell diffusion MRI. - Daan Christiaens; Lucilio Cordero-Grande; Maximilian Pietsch; Jana Hutter; Anthony N. Price; Emer J. Hughes; Katy Vecchiato; Maria Deprez; A. David Edwards; Joseph V. Hajnal; Jacques-Donald Tournier (NeuroImage, 2021)

Automated Multi-class Fetal Cardiac Vessel Segmentation in Aortic Arch Anomalies Using T2-Weighted 3D Fetal MRI. - Paula Ramirez Gilliland; Alena Uus; Milou P. M. van Poppel; Irina Grigorescu; Johannes K. Steinweg; David F. A. Lloyd; Kuberan Pushparajah; Andrew P. King; Maria Deprez (PIPPI@MICCAI, 2022)

Attention-Driven Multi-channel Deformable Registration of Structural and Microstructural Neonatal Data. - Irina Grigorescu; Alena Uus; Daan Christiaens; Lucilio Cordero-Grande; Jana Hutter; Dafnis Batalle; A. David Edwards; Joseph V. Hajnal; Marc Modat; Maria Deprez (PIPPI@MICCAI, 2022)

Segmentation of Periventricular White Matter in Neonatal Brain MRI: Analysis of Brain Maturation in Term and Preterm Cohorts. - Alena Uus; Mohammad-Usamah Ayub; Abi Gartner; Vanessa Kyriakopoulou; Maximilian Pietsch; Irina Grigorescu; Daan Christiaens; Jana Hutter; Lucilio Cordero-Grande; Anthony Price; Dafnis Batalle; Serena J. Counsell; et al. (PIPPI@MICCAI, 2022)

Automated 3D reconstruction of the fetal thorax in the standard atlas space from motion-corrupted MRI stacks for 21-36 weeks GA range. - Alena Uus; Irina Grigorescu; Milou P. M. van Poppel; Johannes K. Steinweg; Thomas A. Roberts; Mary A. Rutherford; Joseph V. Hajnal; David F. A. Lloyd; Kuberan Pushparajah; Maria Deprez (Medical Image Anal., 2022)

Predicting age and clinical risk from the neonatal connectome. - Yassine Taoudi-Benchekroun; Daan Christiaens; Irina Grigorescu; Oliver Gale-Grant; Andreas Schuh; Maximilian Pietsch; Andrew Chew; Nicholas Harper; Shona Falconer; Tanya Poppe; Emer J. Hughes; Jana Hutter; et al. (NeuroImage, 2022)

Quantitative T2 Relaxometry in Fetal Brain: Validation Using Modified FaBiaN Fetal Brain MRI Simulator. - Suryava Bhattacharya; Anthony Price; Alena Uus; Helena S. Sousa; Massimo Marenzana; Kathleen Colford; Peter Murkin; Maggie Lee; Lucilio Cordero-Grande; Rui Pedro A. G. Teixeira; Shaihan J. Malik; Maria Deprez (PIPPI@MICCAI, 2023)

Towards Automatic Risk Prediction of Coarctation of the Aorta from Fetal CMR Using Atlas-Based Segmentation and Statistical Shape Modelling. - Paula Ramirez Gilliland; Uxio Hermida; Alena Uus; Milou P. M. van Poppel; Irina Grigorescu; Johannes K. Steinweg; David F. A. Lloyd; Kuberan Pushparajah; Adelaide de Vecchi; Andrew P. King; Pablo Lamata; Maria Deprez (PIPPI@MICCAI, 2023)

Synthesising Brain Iron Maps from Quantitative Magnetic Resonance Images Using Interpretable Generative Adversarial Networks. - Lindsay Munroe; Maria Deprez; Christos Michaelides; Harold G. Parkes; Kalotina Geraki; Amy H. Herlihy; Po-Wah So (MTSAIL/LEAF/AI4Treat/MMMI/REMIA@MICCAI, 2023)

An Automated Pipeline for Quantitative T2* Fetal Body MRI and Segmentation at Low Field. - Kelly Payette; Alena Uus; Jordina Aviles Verdera; Carla Avena Zampieri; Megan Hall; Lisa Story; Maria Deprez; Mary A. Rutherford; Joseph V. Hajnal; Sébastien Ourselin; Raphaël Tomi-Tricot; Jana Hutter (MICCAI (7), 2023)

A Deep Learning Approach for Segmenting the Subplate and Proliferative Zones in Fetal Brain MRI. - Helena S. Sousa; Abi Gartner; Alena Uus; Vanessa Kyriakopoulou; Brigita Ziukaite; Isa Anzak; Jonathan O'Muircheartaigh; Joseph V. Hajnal; Jacques-Donald Tournier; Alexander Hammers; Mary A. Rutherford; Maria Deprez (PIPPI@MICCAI, 2023)

Combined Quantitative T2* Map and Structural T2-Weighted Tissue-Specific Analysis for Fetal Brain MRI: Pilot Automated Pipeline. - Alena Uus; Megan Hall; Kelly Payette; Joseph V. Hajnal; Maria Deprez; Mary A. Rutherford; Jana Hutter; Lisa Story (PIPPI@MICCAI, 2023)

Multi-task learning for joint weakly-supervised segmentation and aortic arch anomaly classification in fetal cardiac MRI. - Paula Ramirez Gilliland; Alena Uus; Milou P. M. van Poppel; Irina Grigorescu; Johannes K. Steinweg; David F. A. Lloyd; Kuberan Pushparajah; Andrew P. King; Maria Deprez (CoRR, 2023)

Fetal MRI by Robust Deep Generative Prior Reconstruction and Diffeomorphic Registration. - Lucilio Cordero-Grande; Juan Enrique Ortuño Fisac; Alejandra Aguado del Hoyo; Alena Uus; Maria Deprez; Andrés Santos; Joseph V. Hajnal; María J. Ledesma-Carbayo (IEEE Trans. Medical Imaging, 2023)

Automatic 8-Tissue Segmentation for 6-Month Infant Brains. - Yilan Dong; Vanessa Kyriakopoulou; Irina Grigorescu; Grainne M. McAlonan; Dafnis Batalle; Maria Deprez (PIPPI@MICCAI, 2024)

Rotor Core Projection Ablation (RCPA): Novel Computational Approach to Catheter Ablation Therapy for Atrial Fibrillation. - George Obada; Shaheim Ogbomo-Harmitt; Maria Deprez; Robin Van Den Abeelen; Nele Vandersickel; Oleg V. Aslanidi (CMRxRecon/MBAS/STACOM@MICCAI, 2024)

Towards Automated Multi-regional Lung Parcellation for 0.55-3T 3D T2w Fetal MRI. - Alena Uus; Carla Avena Zampieri; Fenella Downes; Alexia Egloff Collado; Megan Hall; Joseph Davidson; Kelly Payette; Jordina Aviles Verdera; Irina Grigorescu; Joseph V. Hajnal; Maria Deprez; Michael Aertsen; et al. (PIPPI@MICCAI, 2024)

Deep Learning Multi-channel Structural and Diffusion Tensor Neonatal Image Registration. - Irina Grigorescu; Alena Uus; Daan Christiaens; Lucilio Cordero-Grande; Jana Hutter; Dafnis Batalle; A. David Edwards; Joseph V. Hajnal; Marc Modat; Maria Deprez (WBIR, 2024)

Applications of interpretable deep learning in neuroimaging: a comprehensive review. - Lindsay Munroe; Mariana da Silva; Faezeh Heidari; Irina Grigorescu; Simon Dahan; Emma C. Robinson; Maria Deprez; Po-Wah So (CoRR, 2024)

Craniofacial phenotyping with fetal MRI: a feasibility study of 3D visualisation, segmentation, surface-rendered and physical models. - Jacqueline Matthew; Alena Uus; Leah De Souza; Robert Wright; Abi Fukami-Gartner; Gema Priego; Carlo Saija; Maria Deprez; Alexia Egloff Collado; Jana Hutter; Lisa Story; Christina Malamateniou; et al. (BMC Medical Imaging, 2024)

Fetal body organ T2* relaxometry at low field strength (FOREST). - Kelly Payette; Alena Uus; Jordina Aviles Verdera; Megan Hall; Alexia Egloff; Maria Deprez; Raphaël Tomi-Tricot; Joseph V. Hajnal; Mary A. Rutherford; Lisa Story; Jana Hutter (Medical Image Anal., 2025)