Reversal and Transposition Distance of Linear Chromosomes. - Maria Emília Telles Walter; Zanoni Dias; João Meidanis (SPIRE, 1998)

Algoritmos para problemas em rearranjos de genomas. - Maria Emília Telles Walter (1999)

A New Approach for Approximating the Tranposition Distance. - Maria Emília Telles Walter; Zanoni Dias; João Meidanis (SPIRE, 2000)

A Lower Bound on the Reversal and Transposition Diameter. - João Meidanis; Maria Emília Telles Walter; Zanoni Dias (J. Comput. Biol., 2002)

Working on the Problem of Sorting by Transpositions on Genome Rearrangements. - Maria Emília Telles Walter; Luiz Reginaldo A. F. Curado; Adilton G. Oliveira (CPM, 2003)

Comparing Two Long Biological Sequences Using a DSM System. - Renata Cristina Faray Melo; Maria Emília Telles Walter; Alba Cristina Magalhaes Alves de Melo; Rodolfo Bezerra Batista; Marcelo Nardelli Pinto Santana; Thelmo E. S. Martins; Tiago M. Fonseca (Euro-Par, 2003)

Parallel DNA Sequence Alignment Using a DSM System in a Cluster of Workstations. - Renata Cristina Faray Melo; Maria Emília Telles Walter; Alba Cristina Magalhaes Alves de Melo; Rodolfo Bezerra Batista (International Conference on Computational Science, 2003)

Improving the algorithm of Bafna and Pevzner for the problem of sorting by transpositions. - Maria Emília Telles Walter; Mauro C. Sobrinho (WOB, 2003)

A Performance Evaluation of a Local DNA Sequence Alignment Algorithm on a Cluster of Workstations. - Azzedine Boukerche; Alba Cristina Magalhaes Alves de Melo; Maria Emília Telles Walter; Renata Cristina Faray Melo; Marcelo Nardelli Pinto Santana; Rodolfo Bezerra Batista (IPDPS, 2004)

A program to visualize multiple alignments. - Daniel A. S. Anjos; Rodrigo Coimbra; Shana Santos; Maria Jose Carvalho; Marcelo M. Brigido; Maria Emília Telles Walter (WOB, 2004)

Rede BIOFOCO: A distributed computation of Interpro Pfam, PROSITE and ProDom for protein annotation. - Edward de Oliveira Ribeiro; Gustavo G. Zerlotini; Irving Lopes; Victor Ribeiro; Alba Cristina Magalhaes Alves de Melo; Maria Emília Telles Walter; Marcos Motta (WOB, 2004)

An approximation algorithm for the problem of sorting by transversals. - Maria Emília Telles Walter; Ana Luisa Freire; Clesio Moura; Daniela Xavier (WOB, 2004)

Local DNA Sequence Alignment in a Cluster ofWorkstations: Algorithms and Tools. - Alba Cristina Magalhaes Alves de Melo; Maria Emília M. T. Walter; Renata Cristina Faray Melo; Marcelo Nardelli Pinto Santana; Rodolfo Bezerra Batista (J. Braz. Comput. Soc., 2004)

A Method for Comparing Three Genomes. - Guilherme P. Telles; Marcelo M. Brigido; Nalvo F. Almeida; Carlos Juliano M. Viana; Daniel A. S. Anjos; Maria Emília Telles Walter (BSB, 2005)

Improving the algorithm of Bafna and Pevzner for the problem of sorting by transpositions: a practical approach. - Maria Emília Telles Walter; Mauro C. Sobrinho; Eugenia T. G. Oliveira; Lorena S. Soares; Adilton G. Oliveira; Thelmo E. S. Martins; Tiago M. Fonseca (J. Discrete Algorithms, 2005)

A Method for Inferring Biological Functions Using Homologous Genes Among Three Genomes. - Daniel A. S. Anjos; Gustavo G. Zerlotini; Guilherme A. Pinto; Maria Emília Telles Walter; Marcelo M. Brigido; Guilherme P. Telles; Carlos Juliano M. Viana; Nalvo F. Almeida (BSB, 2007)

Parallel strategies for the local biological sequence alignment in a cluster of workstations. - Azzedine Boukerche; Alba Cristina Magalhaes Alves de Melo; Mauricio Ayala-Rincón; Maria Emília Telles Walter (J. Parallel Distributed Comput., 2007)

p2pBIOFOCO: Proposing a Peer-to-Peer System for Distributed BLAST Execution. - Edward de Oliveira Ribeiro; Maria Emília Telles Walter; Marcos Mota Costa; Roberto C. Togawa; Georgios Joannis Pappas Jr. (HPCC, 2008)

Transposition Distance Based on the Algebraic Formalism. - Cleber V. G. Mira; Zanoni Dias; Hederson P. Santos; Guilherme A. Pinto; Maria Emília M. T. Walter (BSB, 2008)

Using BioAgentsfor Supporting Manual Annotation on Genome Sequencing Projects. - Célia Ghedini Ralha; Hugo W. Schneider; Lucas O. da Fonseca; Maria Emília M. T. Walter; Marcelo M. Brigido (BSB, 2008)

SOM-PORTRAIT: Identifying Non-coding RNAs Using Self-Organizing Maps. - Tulio C. Silva; Pedro A. Berger; Roberto T. Arrial; Roberto C. Togawa; Marcelo M. Brigido; Maria Emília M. T. Walter (BSB, 2009)

Reinforcement Learning Method for BioAgents. - Célia Ghedini Ralha; Hugo W. Schneider; Maria Emília M. T. Walter; Ana Lúcia Cetertich Bazzan (SBRN, 2010)

A conceptual data model for transcriptome project pipeline. - Ruben Cruz Huacarpuma; Maristela Holanda; Maria Emília M. T. Walter (BIBM Workshops, 2011)

A Cloud Architecture for Bioinformatics Workflows. - Hugo Saldanha; Edward de Oliveira Ribeiro; Maristela Holanda; Aletéia P. F. Araújo; Genaína Nunes Rodrigues; Maria Emília Telles Walter; João Carlos Setubal; Alberto M. R. Dávila (CLOSER, 2011)

A Multi-agent Tool to Annotate Biological Sequences. - Célia Ghedini Ralha; Hugo W. Schneider; Maria Emília M. T. Walter; Marcelo M. Brigido (ICAART (2), 2011)

Regene: Automatic Construction of a Multiple Component Dirichlet Mixture Priors Covariance Model to Identify Non-coding RNA. - Felipe Lessa; Daniele Martins Neto; Katia S. Guimarães; Marcelo M. Brigido; Maria Emília Telles Walter (ISBRA, 2011)

A Conceptual Model for Transcriptome High-Throughput Sequencing Pipeline. - Ruben Cruz Huacarpuma; Maristela Holanda; Maria Emília Telles Walter (BSB, 2011)

kGC: Finding Groups of Homologous Genes across Multiple Genomes. - Guilherme P. Telles; Nalvo F. Almeida; Marcelo M. Brigido; Paulo Antonio Alvarez; Maria Emília Telles Walter (BSB, 2011)

Managing data provenance in genome project workflows. - Renato de Paula; Maristela Holanda; Maria Emília M. T. Walter; Sérgio Lifschitz (BIBM Workshops, 2012)

Task Scheduling in a Federated Cloud Infrastructure for Bioinformatics Applications. - C. A. L. Borges; Hugo Saldanha; Edward de Oliveira Ribeiro; Maristela Holanda; Aletéia P. F. Araújo; Maria Emília M. T. Walter (CLOSER, 2012)

A Bioconductor Based Workflow for Z-DNA Region Detection and Biological Inference. - Halian Vilela; Tainá Raiol; Andrea Queiroz Maranhão; Maria Emília Telles Walter; Marcelo M. Brigido (BSB, 2012)

ACOsched: A scheduling algorithm in a federated cloud infrastructure for bioinformatics applications. - Gabriel S. S. de Oliveira; Edward de Oliveira Ribeiro; Diogo A. Ferreira; Aletéia P. F. Araújo; Maristela T. Holanda; Maria Emília M. T. Walter (BIBM, 2013)

Automatic capture of provenance data in genome project workflows. - Rodrigo Pinheiro; Maristela Holanda; Aletéia P. F. Araújo; Maria Emília Telles Walter; Sérgio Lifschitz (BIBM, 2013)

ncRNA-Agents: A Multiagent System for Non-coding RNA Annotation. - Wosley Arruda; Célia Ghedini Ralha; Tainá Raiol; Marcelo M. Brigido; Maria Emília M. T. Walter; Peter F. Stadler (BSB, 2013)

A Pipeline to Characterize Virulence Factors in Mycobacterium Massiliense Genome. - Guilherme Menegói; Tainá Raiol; João Victor de Araújo Oliveira; Edans Flavius de Oliveira Sandes; Alba Cristina Magalhaes Alves de Melo; Andrea Queiroz Maranhão; Ildinete Silva-Pereira; Anamélia Lorenzetti Bocca; Ana Paula Junqueira-Kipnis; Maria Emília M. T. Walter; André Kipnis; Marcelo de Macedo Brígido (BSB, 2013)

Provenance in bioinformatics workflows. - Renato de Paula; Maristela Holanda; Luciana S. A. Gomes; Sérgio Lifschitz; Maria Emília M. T. Walter (BMC Bioinform., 2013)

Live Phylogeny. - Guilherme P. Telles; Nalvo F. Almeida; Rosane Minghim; Maria Emília M. T. Walter (J. Comput. Biol., 2013)

Genomic data persistency on a NoSQL database system. - Rodrigo Aniceto; Rene Xavier; Maristela Holanda; Maria Emília Telles Walter; Sérgio Lifschitz (BIBM, 2014)

Storing provenance data of genome project workflows using graph database. - Rodrigo Pinheiro; Bruno Aires; Aletéia P. F. Araújo; Maristela Holanda; Maria Emília Telles Walter; Sérgio Lifschitz (BIBM, 2014)

A Storage Policy for a Hybrid Federated Cloud platform: A Case Study for Bioinformatics. - Deric Lima; Breno Moura; Gabriel S. S. de Oliveira; Edward de Oliveira Ribeiro; Aletéia Patrícia Favacho de Araújo; Maristela Holanda; Roberto C. Togawa; Maria Emília Telles Walter (CCGRID, 2014)

Excalibur: an autonomic cloud architecture for executing parallel applications. - Alessandro Ferreira Leite; Tainá Raiol; Claude Tadonki; Maria Emília M. T. Walter; Christine Eisenbeis; Alba Cristina Magalhaes Alves de Melo (CloudDP@EuroSys, 2014)

Multi-objective optimization applied to systematic conservation planning and spatial conservation priorities under climate change. - Shana Schlottfeldt; Jon Timmis; Maria Emília M. T. Walter; André C. P. L. F. de Carvalho; José Alexandre Felizola Diniz-Filho; Lorena M. Simon; Rafael D. Loyola; Mariana P. C. Telles (GECCO (Companion), 2014)

Storage Policy for Genomic Data in Hybrid Federated Clouds. - Ricardo Gallon; Maristela Holanda; Aletéia P. F. Araújo; Maria Emília Telles Walter (BSB, 2014)

Genome-Wide Identification of Non-coding RNAs in Komagatella pastoris str. GS115. - Hugo W. Schneider; Sebastian Bartschat; Gero Doose; Lucas Maciel 001; Erick Pizani; Marcelo Bassani; Fernando Araripe Torres; Sebastian Will; Tainá Raiol; Marcelo M. Brigido; Maria Emília Telles Walter; Peter F. Stadler (BSB, 2014)

A study of genomic data provenance in NoSQL document-oriented database systems. - Valeria Guimarâes; Fernanda Hondo; Rodrigo F. Almeida; Harley Vera Olivera; Maristela Holanda; Aletéia P. F. Araújo; Maria Emília Telles Walter; Sérgio Lifschitz (BIBM, 2015)

A Multi-objective Optimization Approach Associated to Climate Change Analysis to Improve Systematic Conservation Planning. - Shana Schlottfeldt; Jon Timmis; Maria Emília Telles Walter; André Carlos Ponce de Leon Ferreira de Carvalho; Lorena M. Simon; Rafael D. Loyola; José Alexandre Felizola Diniz-Filho (EMO (2), 2015)

Using Multi-Objective Artificial Immune Systems to Find Core Collections Based on Molecular Markers. - Shana Schlottfeldt; Maria Emília M. T. Walter; Jon Timmis; André C. P. L. F. de Carvalho; Mariana P. C. Telles; José Alexandre Felizola Diniz-Filho (GECCO, 2015)

Knowledge-based reasoning to annotate noncoding RNA using multi-agent system. - Wosley Arruda; Daniel S. Souza; Célia Ghedini Ralha; Maria Emília M. T. Walter; Tainá Raiol; Marcelo M. Brigido; Peter F. Stadler (J. Bioinform. Comput. Biol., 2015)

An evaluation of data replication for bioinformatics workflows on NoSQL systems. - Iasmini Lima; Matheus Oliveira; Diego Kieckbusch; Maristela Holanda; Maria Emília M. T. Walter; Aletéia Patrícia Favacho de Araújo; Márcio Victorino; Waldeyr Mendes Cordeiro da Silva; Sérgio Lifschitz (BIBM, 2016)

BioNimbuZ: A federated cloud platform for bioinformatics applications. - Michel J. F. Rosa; Breno Moura; Guilherme Vergara; Lucas Santos; Edward de Oliveira Ribeiro; Maristela Holanda; Maria Emília Telles Walter; Aletéia Patrícia Favacho de Araújo (BIBM, 2016)

2Path: A terpenoid metabolic network modeled as graph database. - Waldeyr Mendes Cordeiro da Silva; Danilo Vilar; Daniel S. Souza; Maria Emília Telles Walter; Marcelo M. Brigido; Maristela Holanda (BIBM, 2016)

SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification. - João Victor de Araújo Oliveira; Fabrizio Costa; Rolf Backofen; Peter F. Stadler; Maria Emília Telles Walter; Jana Hertel (BMC Bioinform., 2016)

AProvBio: An architecture for data provenance in bioinformatics workflows using graph database. - Rodrigo F. Almeida; Waldeyr Mendes Cordeiro da Silva; Klayton Castro; Maria Emília Telles Walter; Aletéia Patrícia Favacho de Araújo; Maristela Holanda; Sérgio Lifschitz (BIBM, 2017)

Data provenance management for bioinformatics workflows using NoSQL database systems in a cloud computing environment. - Fernanda Hondo; Polyane Wercelens; Waldeyr Mendes Cordeiro da Silva; Klayton Castro; Ingrid Santana; Maria Emília Telles Walter; Aletéia Patrícia Favacho de Araújo; Maristela Holanda; Sérgio Lifschitz (BIBM, 2017)

Distance-based Live Phylogeny. - Graziela S. Araújo; Guilherme P. Telles; Maria Emília M. T. Walter; Nalvo F. Almeida (BIOINFORMATICS, 2017)

A Branch and Bound for the Large Live Parsimony Problem. - Rogério Güths; Guilherme P. Telles; Maria Emília M. T. Walter; Nalvo F. Almeida (BIOINFORMATICS, 2017)

A Heuristic for the Live Parsimony Problem. - Rogério Güths; Guilherme P. Telles; Maria Emília M. T. Walter; Nalvo F. Almeida (BIOSTEC (Selected Papers), 2017)

Using a multi-objective artificial immune system approach for biodiversity conservation. - Shana Schlottfeldt; Maria Emília Telles Walter; André C. P. L. F. de Carvalho; Mariana P. C. Telles; José Alexandre Felizola Diniz-Filho (ICNC-FSKD, 2017)

BioNimbuZ: a federated cloud platform for bioinformatics applications. - Aletéia Patrícia Favacho de Araújo; Michel J. F. Rosa; Breno Moura; Guilherme Vergara; Maristela Holanda; Maria Emília Telles Walter (Int. J. Data Min. Bioinform., 2017)

A terpenoid metabolic network modelled as graph database. - Waldeyr Mendes Cordeiro da Silva; Danilo Vilar; Daniel S. Souza; Maria Emília Telles Walter; Maristela Terto de Holanda; Marcelo de Macedo Brígido (Int. J. Data Min. Bioinform., 2017)

A Genetic Algorithm for Character State Live Phylogeny. - Rafael L. Fernandes; Rogério Güths; Guilherme P. Telles; Nalvo F. Almeida; Maria Emília M. T. Walter (BSB, 2018)

S^2FS : Single Score Feature Selection Applied to the Problem of Distinguishing Long Non-coding RNAs from Protein Coding Transcripts. - Bruno C. Kümmel; André C. P. L. F. de Carvalho; Marcelo M. Brigido; Célia Ghedini Ralha; Maria Emília M. T. Walter (BSB, 2018)

Graph Databases in Molecular Biology. - Waldeyr Mendes Cordeiro da Silva; Polyane Wercelens; Maria Emília M. T. Walter; Maristela Holanda; Marcelo M. Brigido (BSB, 2018)

An Argumentation Theory-Based Multiagent Model to Annotate Proteins. - Daniel S. Souza; Waldeyr Mendes Cordeiro da Silva; Célia Ghedini Ralha; Maria Emília M. T. Walter (BSB, 2018)

A Workflow for Predicting MicroRNAs Targets via Accessibility in Flavivirus Genomes. - Andressa Valadares; Maria Emília M. T. Walter; Tainá Raiol (BSB, 2018)

Human-Computer Interaction Communicability Evaluation Method Applied to Bioinformatics. - Gabriella Esteves; Waldeyr Mendes Cordeiro da Silva; Maria Emília Telles Walter; Marcelo M. Brigido; Fernanda Lima (WorldCIST (2), 2018)

Live neighbor-joining. - Guilherme P. Telles; Graziela S. Araújo; Maria Emília Telles Walter; Marcelo M. Brigido; Nalvo F. Almeida (BMC Bioinform., 2018)

Formalization of Block Pruning: Reducing the Number of Cells Computed in Exact Biological Sequence Comparison Algorithms. - Edans Flavius de Oliveira Sandes; George Luiz Medeiros Teodoro; Maria Emília M. T. Walter; Xavier Martorell; Eduard Ayguadé; Alba Cristina Magalhaes Alves de Melo (Comput. J., 2018)

Venom Gland Peptides of Arthropods from the Brazilian Cerrado Biome Unveiled by Transcriptome Analysis. - Giovanni M. Guidini; Waldeyr M. C. Silva; Thalita S. Camargos; Caroline F. B. Mourão; Priscilla Galante; Tainá Raiol; Marcelo de Macedo Brígido; Maria Emília M. T. Walter; Elisabeth N. F. Schwartz (BSB, 2019)

Managing data provenance for bioinformatics workflows using AProvBio. - Rodrigo F. Almeida; Waldeyr Mendes Cordeiro da Silva; Klayton Castro; Aletéia Patrícia Favacho de Araújo; Maria Emília Telles Walter; Sérgio Lifschitz; Maristela Holanda (Int. J. Comput. Biol. Drug Des., 2019)

What do Female Students in Middle and High Schools Think about Computer Science Majors in Brasilia, Brazil? A Survey in 2011 and 2019. - Maristela Holanda; Roberto Nunes Mourão; George von Borries; Guilherme Novaes Ramos; Aletéia Patrícia Favacho de Araújo; Maria Emília Telles Walter (FIE, 2020)

Meninas.comp Project: Programming for Girls in High School in Brazil. - Maristela Holanda; Aletéia P. F. Araújo; Maria Emília M. T. Walter (RESPECT, 2020)

Computational Simulations for Cyclizations Catalyzed by Plant Monoterpene Synthases. - Waldeyr Mendes Cordeiro da Silva; Daniela P. de Andrade; Jakob L. Andersen; Maria Emília Telles Walter; Marcelo M. Brigido; Peter F. Stadler; Christoph Flamm (BSB, 2020)

The Brazilian School Girls' Perspectives on a Computer Science Major. - Maristela Holanda; Roberto Nunes Mourão; Guilherme Novaes Ramos; Aletéia P. F. Araújo; Maria Emília M. T. Walter; Vinicius Borges; George von Borries (CLEI Electron. J., 2020)

An algebraic 1.375-approximation algorithm for the Transposition Distance Problem. - Luiz Augusto G. Silva; Luis A. B. Kowada; Noraí Romeu Rocco; Maria Emília M. T. Walter (CoRR, 2020)

Are spliced ncRNA host genes distinct classes of lncRNAs? - Rituparno Sen; Jörg Fallmann; Maria Emília M. T. Walter; Peter F. Stadler (Theory Biosci., 2020)

Machine Learning Studies of Non-coding RNAs based on Artificially Constructed Training Data. - Mirele C. S. F. Costa; João Victor de Araújo Oliveira; Waldeyr M. C. Silva; Rituparno Sen; Jörg Fallmann; Peter F. Stadler; Maria Emília M. T. Walter (BIOINFORMATICS, 2021)

CellHeap: A Workflow for Optimizing COVID-19 Single-Cell RNA-Seq Data Processing in the Santos Dumont Supercomputer. - Vanessa S. Silva; Maiana O. C. Costa; Maria Clicia Stelling de Castro; Helena S. Silva; Maria Emília M. T. Walter; Alba C. M. A. Melo; Kary A. C. Ocaña; Marcelo T. dos Santos; Marisa F. Nicolas; Anna Cristina C. Carvalho; Andrea Henriques-Pons; Fabrício Alves Barbosa da Silva (BSB, 2021)

A new 1.375-approximation algorithm for sorting by transpositions. - Luiz Augusto G. Silva; Luis Antonio Brasil Kowada; Noraí Romeu Rocco; Maria Emília M. T. Walter (Algorithms Mol. Biol., 2022)

A Barrier for Further Approximating Sorting by Transpositions. - Luiz Augusto G. Silva; Luis A. B. Kowada; Maria Emília M. T. Walter (J. Comput. Biol., 2023)

Democratising Artificial Intelligence for Pandemic Preparedness and Global Governance in Latin American and Caribbean Countries. - André C. P. L. F. de Carvalho; Robson Bonidia; Jude Dzevela Kong; Mariana Dauhajre; Cláudio José Struchiner; Guilherme Tegoni Goedert; Peter F. Stadler; Maria Emília M. T. Walter; Danilo Sipoli Sanches; Troy Day; Marcia Castro; John Edmunds; et al. (CoRR, 2024)