A finite state automaton model for multi-neuron simulations. - Maria J. Schilstra; Alistair G. Rust; Rod Adams; Hamid Bolouri (Neurocomputing, 2002)

Design of spatially extended neural networks for specific applications. - Rod Adams; Rene te Boekhorst; Alistair G. Rust; Paul Kaye; Maria J. Schilstra (IJCNN, 2004)

CellML2SBML: conversion of CellML into SBML. - Maria J. Schilstra; Lu Li 002; Joanne Matthews; Andrew Finney; Michael Hucka; Nicolas Le Novère (Bioinform., 2006)

BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. - Nicolas Le Novère; Benjamin J. Bornstein; Alexander Broicher; Mélanie Courtot; Marco Donizelli; Harish Dharuri; Lu Li 002; Herbert M. Sauro; Maria J. Schilstra; Bruce E. Shapiro; Jacky L. Snoep; Michael Hucka (Nucleic Acids Res., 2006)

The Essential Motif that wasn't there: Topological and Lesioning Analysis of Evolved Genetic Regulatory Networks. - Johannes F. Knabe; Chrystopher L. Nehaniv; Maria J. Schilstra (ALIFE, 2007)

The NetBuilder' project: development of a tool for constructing, simulating, evolving, and analysing complex regulatory networks. - Katja Wegner; Johannes F. Knabe; Mark Robinson; Attila Egri-Nagy; Maria J. Schilstra; Chrystopher L. Nehaniv (BMC Syst. Biol., 2007)

Evolution and Morphogenesis of Differentiated Multicellular Organisms - Autonomously Generated Diffusion Gradients for Positional Information. - Johannes F. Knabe; Maria J. Schilstra; Chrystopher L. Nehaniv (ALIFE, 2008)

Regulation of gene regulation - smooth binding with dynamic affinity affects evolvability. - Johannes F. Knabe; Chrystopher L. Nehaniv; Maria J. Schilstra (IEEE Congress on Evolutionary Computation, 2008)

Genetic Regulatory Network Models of Biological Clocks: Evolutionary History Matters. - Johannes F. Knabe; Chrystopher L. Nehaniv; Maria J. Schilstra (Artif. Life, 2008)

Bio-Logic: Gene Expression and the Laws of Combinatorial Logic. - Maria J. Schilstra; Chrystopher L. Nehaniv (Artif. Life, 2008)

Automatic analysis of computation in biochemical reactions. - Attila Egri-Nagy; Chrystopher L. Nehaniv; John L. Rhodes 001; Maria J. Schilstra (Biosyst., 2008)

Do motifs reflect evolved function? - No convergent evolution of genetic regulatory network subgraph topologies. - Johannes F. Knabe; Chrystopher L. Nehaniv; Maria J. Schilstra (Biosyst., 2008)

Transformation Semigroups as Constructive Dynamical Spaces. - Attila Egri-Nagy; Paolo Dini; Chrystopher L. Nehaniv; Maria J. Schilstra (OPAALS, 2010)

Stochastic model of template-directed elongation processes in biology. - Maria J. Schilstra; Chrystopher L. Nehaniv (Biosyst., 2010)

Algebraic Analysis of the Computation in the Belousov-Zhabotinksy Reaction. - Paolo Dini; Chrystopher L. Nehaniv; Attila Egri-Nagy; Maria J. Schilstra (IPCAT, 2012)

The Effective Calcium/Calmodulin Concentration Determines the Sensitivity of CaMKII to the Frequency of Calcium Oscillations. - Thiago M. Pinto; Maria J. Schilstra; Volker Steuber (IPCAT, 2012)

BIOMICS Project: Biological and Mathematical Basis of Interaction Computing. - Paolo Dini; Chrystopher L. Nehaniv; Attila Egri-Nagy; Maria J. Schilstra; Daniel Schreckling; Joachim Posegga; Gábor Horváth; Alastair J. Munro (Int. J. Unconv. Comput., 2012)

Exploring the concept of interaction computing through the discrete algebraic analysis of the Belousov-Zhabotinsky reaction. - Paolo Dini; Chrystopher L. Nehaniv; Attila Egri-Nagy; Maria J. Schilstra (Biosyst., 2013)

volving Spiking Neural Networks for Temporal Pattern Recognition in the Presence of Noise. - Ahmed Abdelmotaleb; Neil Davey; Maria J. Schilstra; Volker Steuber; Borys Wróbel (ALIFE, 2014)