maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments. - Ana Conesa; María José Nueda; Alberto Ferrer 001; Manuel Talón (Bioinform., 2006)

Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA. - María José Nueda; Ana Conesa; Johan A. Westerhuis; Huub C. J. Hoefsloot; Age K. Smilde; Manuel Talón; Alberto Ferrer 001 (Bioinform., 2007)

Functional assessment of time course microarray data. - María José Nueda; Patricia Sebastián; Sonia Tarazona; Francisco García-García 002; Joaquín Dopazo; Alberto Ferrer 001; Ana Conesa (BMC Bioinform., 2009)

Serial Expression Analysis: a web tool for the analysis of serial gene expression data. - María José Nueda; José Carbonell; Ignacio Medina; Joaquín Dopazo; Ana Conesa (Nucleic Acids Res., 2010)

Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series. - María José Nueda; Sonia Tarazona; Ana Conesa (Bioinform., 2014)

Pathway network inference from gene expression data. - Ignacio Ponzoni; María José Nueda; Sonia Tarazona; Stefan Götz 003; David Montaner; Julieta Sol Dussaut; Joaquín Dopazo; Ana Conesa (BMC Syst. Biol., 2014)

Identification and visualization of differential isoform expression in RNA-seq time series. - María José Nueda; Jordi Martorell-Marugan; Cristina Martí; Sonia Tarazona; Ana Conesa (Bioinform., 2018)

MultiBaC: an R package to remove batch effects in multi-omic experiments. - Manuel Ugidos; María José Nueda; José Manuel Prats-Montalbán; Alberto Ferrer 001; Ana Conesa; Sonia Tarazona (Bioinform., 2022)