Assemblytics: a web analytics tool for the detection of variants from an assembly. - Maria Nattestad; Michael C. Schatz (Bioinform., 2016)

GenomeScope: fast reference-free genome profiling from short reads. - Gregory W. Vurture; Fritz J. Sedlazeck; Maria Nattestad; Charles J. Underwood; Han Fang; James Gurtowski; Michael C. Schatz (Bioinform., 2017)

BigTop: a three-dimensional virtual reality tool for GWAS visualization. - Samuel T. Westreich; Maria Nattestad; Christopher Meyer (BMC Bioinform., 2020)

Ribbon: intuitive visualization for complex genomic variation. - Maria Nattestad; Robert Aboukhalil; Chen-Shan Chin; Michael C. Schatz (Bioinform., 2021)

Knowledge distillation for fast and accurate DNA sequence correction. - Anastasiya Belyaeva; Joel Shor; Daniel E. Cook; Kishwar Shafin; Daniel Liu; Armin Töpfer; Aaron M. Wenger; William J. Rowell; Howard Yang; Alexey Kolesnikov; Cory Y. McLean; Maria Nattestad; et al. (CoRR, 2022)

Accurate human genome analysis with element avidity sequencing. - Andrew Carroll; Alexey Kolesnikov; Daniel E. Cook; Lucas Brambrink; Kelly N. Wiseman; Sophie M. Billings; Semyon Kruglyak; Bryan R. Lajoie; Junhua Zhao; Shawn E. Levy; Cory Y. McLean; Kishwar Shafin; et al. (BMC Bioinform., 2025)