ACNE: a summarization method to estimate allele-specific copy numbers for Affymetrix SNP arrays. - Maria Ortiz-Estevez; Henrik Bengtsson; Angel Rubio (Bioinform., 2010)

Getting DNA copy numbers without control samples. - Maria Ortiz-Estevez; Ander Aramburu; Angel Rubio (Algorithms Mol. Biol., 2012)

CalMaTe: a method and software to improve allele-specific copy number of SNP arrays for downstream segmentation. - Maria Ortiz-Estevez; Ander Aramburu; Henrik Bengtsson; Pierre Neuvial; Angel Rubio (Bioinform., 2012)