Fast Reconstruction of Compact Context-Specific Metabolic Network Models. - Nikos Vlassis; Maria Pires Pacheco; Thomas Sauter (PLoS Comput. Biol., 2014)

Towards improved genome-scale metabolic network reconstructions: unification, transcript specificity and beyond. - Thomas Pfau; Maria Pires Pacheco; Thomas Sauter (Briefings Bioinform., 2016)

Towards the Integration of Metabolic Network Modelling and Machine Learning for the Routine Analysis of High-Throughput Patient Data. - Maria Pires Pacheco; Tamara Bintener; Thomas Sauter (Automated Reasoning for Systems Biology and Medicine, 2019)

Project-based learning course on metabolic network modelling in computational systems biology. - Thomas Sauter; Tamara Bintener; Ali Kishk; Luana Presta; Tessy Prohaska; Daniel Guignard; Ni Zeng; Claudia Cipriani; Sundas Arshad; Thomas Pfau; Patricia Martins Conde; Maria Pires Pacheco (PLoS Comput. Biol., 2022)

Metabolic models predict fotemustine and the combination of eflornithine/rifamycin and adapalene/cannabidiol for the treatment of gliomas. - Ali Kishk; Maria Pires Pacheco; Tony Heurtaux; Thomas Sauter (Briefings Bioinform., 2024)