Recognizing Patterns of Nucleosome and DNA Structures Positioning. - Elen Tevanyan; Maria Poptsova (BIBM, 2018)

Recognition of DNA Secondary Structures as Nucleosome Barriers with Deep Learning Methods. - Fedor Pavlov; Maria Poptsova (BIBM, 2020)

Cancer Breakpoint Hotspots Versus Individual Breakpoints Prediction by Machine Learning Models. - Kseniia Cheloshkina; Islam Bzhikhatlov; Maria Poptsova (ISBRA, 2020)

Randomness in Cancer Breakpoint Prediction. - Kseniia Cheloshkina; Islam Bzhikhatlov; Maria Poptsova (J. Comput. Biol., 2021)

Comprehensive analysis of cancer breakpoints reveals signatures of genetic and epigenetic contribution to cancer genome rearrangements. - Kseniia Cheloshkina; Maria Poptsova (PLoS Comput. Biol., 2021)

Graph Neural Networks for Z-DNA prediction in Genomes. - Artem Voytetskiy; Alan Herbert; Maria Poptsova (BIBM, 2022)

Unsupervised domain adaptation methods for cross-species transfer of regulatory code signals. - Pavel Latyshev; Fedor Pavlov; Alan Herbert; Maria Poptsova (Frontiers Big Data, 2024)