Restricted dead-end elimination: Protein redesign with a bounded number of residue mutations. - Maria Safi; Ryan H. Lilien (J. Comput. Chem., 2010)

Efficient a Priori Identification of Drug Resistant Mutations Using Dead-End Elimination and MM-PBSA. - Maria Safi; Ryan H. Lilien (J. Chem. Inf. Model., 2012)

Computational Modeling of Drug Resistance: Structural and Evolutionary Models. - Maryah Safi (2014)