A new method for finding long consensus patterns in nucleic acid sequences. - Philip Taylor; Paul Rosenberg; Maria Samsonova (Comput. Appl. Biosci., 1991)

Graphical interface to the genetic network database GeNet. - Vassili N. Serov; Alexander V. Spirov; Maria Samsonova (Bioinform., 1998)

NetWork: a Tool for Visualization of Genetic Network Structure and Dynamics. - Vassili N. Serov; Olga V. Kirillova; Maria Samsonova (Visual Representations and Interpretations, 1999)

Spatio-Temporal Registration of the Expression Patterns of Drosophila Segmentation Genes. - Ekaterina M. Myasnikova; David Kosman; John Reinitz; Maria Samsonova (ISMB, 1999)

NetWork: An Interactive Interface to the Tools for Analysis of Genetic Network Structure and Dynamics. - Maria Samsonova; Vassili N. Serov (Pacific Symposium on Biocomputing, 1999)

Design of the Integrated Atlas of Segmentation Gene Expression in Situ. - Maria Samsonova; Ekaterina Poustelnikova; Andrei Pisarev; John Reinitz (German Conference on Bioinformatics, 2000)

Fast Redundant Dyadic Wavelet Transform in Application to Spatial Registration of the Expression Patterns of Drosophila Segmentation Genes. - Konstantin Kozlov; Ekaterina M. Myasnikova; Maria Samsonova; John Reinitz; David Kosman (ICPR, 2000)

Application of the Neural Networks Based on Multi-valued Neurons to Classification of the Images of Gene Expression Patterns. - Igor N. Aizenberg; Ekaterina M. Myasnikova; Maria Samsonova; John Reinitz (Fuzzy Days, 2001)

Classification of the Images of Gene Expression Patterns Using Neural Networks Based on Multi-valued Neurons. - Igor N. Aizenberg; Ekaterina M. Myasnikova; Maria Samsonova (IWANN (2), 2001)

Registration of the expression patterns of Drosophila segmentation genes by two independent methods. - Ekaterina M. Myasnikova; Anastassia Samsonova; Konstantin Kozlov; Maria Samsonova; John Reinitz (Bioinform., 2001)

Support vector regression applied to the determination of the developmental age of a Drosophila embryo from its segmentation gene expression patterns. - Ekaterina M. Myasnikova; Anastassia Samsonova; Maria Samsonova; John Reinitz (ISMB, 2002)

A method for two-dimensional registration and construction of the two-dimensional atlas of gene expression patterns in situ. - Konstantin Kozlov; Ekaterina M. Myasnikova; Andrei Pisarev; Maria Samsonova; John Reinitz (Silico Biol., 2002)

Processing of natural language queries to a relational database. - Maria Samsonova; Andrei Pisarev; Maxim Blagov (ISMB (Supplement of Bioinformatics), 2003)

Mooshka: a system for the management of multidimensional gene expression data in situ. - Andrei Pisarev; Ekaterina Poustelnikova; Maria Samsonova; Peter Baumann 001 (Inf. Syst., 2003)

A database for management of gene expression data in situ. - Ekaterina Poustelnikova; Andrei Pisarev; Maxim Blagov; Maria Samsonova; John Reinitz (Bioinform., 2004)

Erratum to "Mooshka: a system for the management of multidimensional gene expression data in situ": [Information Systems 28(4) (2003) 269-285]. - Andrei Pisarev; Ekaterina Poustelnikova; Maria Samsonova; Peter Baumann 001 (Inf. Syst., 2004)

ImageServer, a Tool for On-line Processing and Analysis of Biological Images. - Andrei Pisarev; Ekaterina Poustelnikova; Konstantin Kozlov; Ekaterina M. Myasnikova; Maria Samsonova; John Reinitz (J. Integr. Bioinform., 2005)

An Information Management System for Collaboration Within Distributed Working Environment. - Maria Samsonova; Andrei Pisarev; Konstantin Kozlov; Ekaterina Poustelnikova; Arthur Tkachenko (DILS, 2006)

Estimation of Errors in Gene Expression Data Introduced by Diffractive Blurring of Confocal Images. - Ekaterina M. Myasnikova; Svetlana Surkova; Maria Samsonova; John Reinitz (IMVIP, 2009)

Estimation of errors introduced by confocal imaging into the data on segmentation gene expression in Drosophila. - Ekaterina M. Myasnikova; Svetlana Surkova; Lena Panok; Maria Samsonova; John Reinitz (Bioinform., 2009)

FlyEx, the quantitative atlas on segmentation gene expression at cellular resolution. - Andrei Pisarev; Ekaterina Poustelnikova; Maria Samsonova; John Reinitz (Nucleic Acids Res., 2009)

Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors. - Manu; Svetlana Surkova; Alexander V. Spirov; Vitaly V. Gursky; Hilde Janssens; Ah-Ram Kim; Ovidiu Radulescu; Carlos E. Vanario-Alonso; David H. Sharp; Maria Samsonova; John Reinitz (PLoS Comput. Biol., 2009)

A regression system for estimation of errors introduced by confocal imaging into gene expression data in situ. - Ekaterina M. Myasnikova; Svetlana Surkova; Grigory Stein; Andrei Pisarev; Maria Samsonova (BMC Bioinform., 2011)

Mechanisms of gap gene expression canalization in the Drosophila blastoderm. - Vitaly V. Gursky; Lena Panok; Ekaterina M. Myasnikova; Manu; Maria Samsonova; John Reinitz; Alexander M. Samsonov (BMC Syst. Biol., 2011)

Mechanisms of developmental robustness. - Vitaly V. Gursky; Svetlana Surkova; Maria Samsonova (Biosyst., 2012)

Modeling of Gap Gene Expression in Drosophila Kruppel Mutants. - Konstantin Kozlov; Svetlana Surkova; Ekaterina M. Myasnikova; John Reinitz; Maria Samsonova (PLoS Comput. Biol., 2012)

Enhanced Differential Evolution Entirely Parallel Method for Biomedical Applications. - Konstantin Kozlov; Nikita Ivanisenko; Vladimir A. Ivanisenko; Nikolay A. Kolchanov; Maria Samsonova; Alexander M. Samsonov (PaCT, 2013)

A software for parameter optimization with Differential Evolution Entirely Parallel method. - Konstantin Kozlov; Alexander M. Samsonov; Maria Samsonova (PeerJ Comput. Sci., 2016)

Quantitative analysis of the heterogeneous population of endocytic vesicles. - Konstantin Kozlov; Vera Kosheverova; Rimma Kamentseva; Marianna Kharchenko; Alena Sokolkova; Elena Kornilova; Maria Samsonova (J. Bioinform. Comput. Biol., 2017)

Dynamic maternal gradients and morphogenetic networks in Drosophila early embryo. - Svetlana Surkova; Elena Golubkova; Ludmila Mamon; Maria Samsonova (Biosyst., 2018)