Adversarial Turing Patterns from Cellular Automata. - Nurislam Tursynbek; Ilya Vilkoviskiy; Maria Sindeeva; Ivan V. Oseledets (AAAI, 2021)

PROSTATA: a framework for protein stability assessment using transformers. - Dmitriy Umerenkov; Fedor Nikolaev; Tatiana I Shashkova; Pavel V. Strashnov; Maria Sindeeva; Andrey Shevtsov; Nikita V. Ivanisenko; Olga L. Kardymon (Bioinform., 2023)

AFToolkit: a framework for molecular modeling of proteins with AlphaFold-derived representations. - Maria Sindeeva; Alexander Telepov; Nikita Ivanisenko; Tatiana I Shashkova; Kuzma Khrabrov; Artem Tsypin; Artur Kadurin; Olga L. Kardymon (Briefings Bioinform., 2025)