Cardio-Pulmonary Substructure Segmentation of CT Images Using Convolutional Neural Networks. - Rabia Haq; Alexandra Hotca; Aditya P. Apte; Andreas Rimner; Joseph O. Deasy; Maria Thor (AIRT@MICCAI, 2019)

Multiple resolution residual network for automatic thoracic organs-at-risk segmentation from CT. - Hyemin Um; Jue Jiang; Maria Thor; Andreas Rimner; Leo Luo; Joseph O. Deasy; Harini Veeraraghavan (CoRR, 2020)

ROE (Radiotherapy Outcomes Estimator): An open-source tool for optimizing radiotherapy prescriptions. - Aditi Iyer; Aditya P. Apte; Ethan Bendau; Maria Thor; Ishita Chen; Jacob Shin; Abraham J. Wu; Daniel Gomez; Andreas Rimner; Ellen Yorke; Joseph O. Deasy; Andrew Jackson (Comput. Methods Programs Biomed., 2023)

Tumor aware recurrent inter-patient deformable image registration of computed tomography scans with lung cancer. - Jue Jiang; Chloe Min Seo Choi; Maria Thor; Joseph O. Deasy; Harini Veeraraghavan (CoRR, 2024)

Towards Universal Text-driven CT Image Segmentation. - Yuheng Li; Yuxiang Lai; Maria Thor; Deborah Marshall; Zachary Buchwald; David S. Yu; Xiaofeng Yang (CoRR, 2025)

RoMedFormer: A Rotary-Embedding Transformer Foundation Model for 3D Genito-Pelvic Structure Segmentation in MRI and CT. - Yuheng Li; Mingzhe Hu; Richard L. J. Qiu; Maria Thor; Andre Williams; Deborah Marshall; Xiaofeng Yang (CoRR, 2025)

Pretrained hybrid transformer for generalizable cardiac substructures segmentation from contrast and non-contrast CTs in lung and breast cancers. - Aneesh Rangnekar; Nikhil Mankuzhy; Jonas Willmann; Chloe Min Seo Choi; Abraham J. Wu; Maria Thor; Andreas Rimner; Harini Veeraraghavan (CoRR, 2025)