Secondary structure assignment that accurately reflects physical and evolutionary characteristics. - Maria Vittoria Cubellis; Fabien Cailliez; Simon C. Lovell (BMC Bioinform., 2005)

Environment specific substitution tables for thermophilic proteins. - Kenji Mizuguchi; M. Sele; Maria Vittoria Cubellis (BMC Bioinform., 2007)

In silico docking of urokinase plasminogen activator and integrins. - Bernard Degryse; Juan Fernández-Recio; Valentina Citro; Francescol Blasi; Maria Vittoria Cubellis (BMC Bioinform., 2008)

Frequent pathological human mutations: a survey. - Marco Cammisa; Antonella Correra; Giuseppina Andreotti; Maria Vittoria Cubellis (IWBBIO, 2013)

Identification and analysis of conserved pockets on protein surfaces. - Marco Cammisa; Antonella Correra; Giuseppina Andreotti; Maria Vittoria Cubellis (BMC Bioinform., 2013)

Bioinformatics tools for marine biotechnology: a practical tutorial with a metagenomic approach. - Ludovica Liguori; Maria Monticelli; Mariateresa Allocca; Maria Vittoria Cubellis; Bruno Hay Mele (BMC Bioinform., 2020)