Bi-alignments as Models of Incongruent Evolution of RNA Sequence and Secondary Structure. - Maria Waldl; Sebastian Will; Michael T. Wolfinger; Ivo L. Hofacker; Peter F. Stadler (CIBB, 2019)

Exogenous Shocks Lead to Increased Responsiveness and Shifts in Sentimental Resilience in Online Discussions. - Chathika Gunaratne; Subash K. Ray; Caroline Lourenco Alves; Maria Waldl (CoRR, 2020)

Local RNA folding revisited. - Maria Waldl; Thomas Spicher; Ronny Lorenz; Irene K. Beckmann; Ivo L. Hofacker; Sarah von Löhneysen; Peter F. Stadler (J. Bioinform. Comput. Biol., 2023)

Integrating High-Throughput RNA-RNA Interaction Data Into RNA Secondary Structure Prediction. - Denis Skibinski; Thomas Spicher; Leonhard Sidl; Paulína Holotová; Yingjie Pan; Maximilian Faissner; Cristian A. Velandia-Huerto; Ronny Lorenz; Maria Waldl; Hua-Ting Yao; Peter F. Stadler (ISBRA (2), 2025)