The RNA Silencing Pathway: The Bits and Pieces That Matter. - Marian Groenenboom; Athanasius F. M. Marée; Paulien Hogeweg (PLoS Comput. Biol., 2005)

The dynamics and efficacy of antiviral RNA silencing: A model study. - Marian Groenenboom; Paulien Hogeweg (BMC Syst. Biol., 2008)

RNA silencing can explain chlorotic infection patterns on plant leaves. - Marian Groenenboom; Paulien Hogeweg (BMC Syst. Biol., 2008)

Metabolic Pathway Inference from Time Series Data: A Non Iterative Approach. - Laura Astola; Marian Groenenboom; Victoria Gomez Roldan; Fred van Eeuwijk; Robert D. Hall; Arnaud Bovy; Jaap Molenaar (PRIB, 2011)