Design and Analysis of a Practical E-Voting Protocol. - Marián Novotný (FIDIS, 2008)

A Privacy-Aware Protocol for Sociometric Questionnaires. - Marián Novotný (MEMICS, 2009)

Design and Analysis of a Generalized Canvas Protocol. - Marián Novotný (WISTP, 2010)

PrankWeb: a web server for ligand binding site prediction and visualization. - Lukás Jendele; Radoslav Krivák; Petr Skoda 001; Marian Novotny; David Hoksza (Nucleic Acids Res., 2019)

PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures. - David Jakubec; Petr Skoda 001; Radoslav Krivák; Marian Novotny; David Hoksza (Nucleic Acids Res., 2022)

DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. - Federica Quaglia; Bálint Mészáros; Edoardo Salladini; András Hatos; Rita Pancsa; Lucía B. Chemes; Mátyás Pajkos; Tamas Lazar; Samuel Peña-Díaz; Jaime Santos; Veronika Ács; Nazanin Farahi; et al. (Nucleic Acids Res., 2022)

AHoJ: rapid, tailored search and retrieval of apo and holo protein structures for user-defined ligands. - Christos P. Feidakis; Radoslav Krivák; David Hoksza; Marian Novotny (Bioinform., 2022)

Cryptic binding site prediction with protein language models. - Vít Skrhak; Kamila Riedlova; Marian Novotny; David Hoksza (BIBM, 2023)