Citationfinder: a knowledge-based system for web pages of citations classification. - Mariana L. Neves; Flávia de Almeida Barros (SMC, 2001)

Asterias: integrated analysis of expression and aCGH data using an open-source, web-based, parallelized software suite. - Ramón Díaz-Uriarte; Andreu Alibés; Edward R. Morrissey; Andrés Cañada; Oscar M. Rueda; Mariana L. Neves (Nucleic Acids Res., 2007)

CBR-Tagger: a case-based reasoning approach to the gene/protein mention problem. - Mariana L. Neves; Monica Chagoyen; José María Carazo; Alberto D. Pascual-Montano (BioNLP, 2008)

Extracting and Normalizing Gene/Protein Mentions with the Flexible and Trainable Moara Java Library. - Mariana L. Neves; José María Carazo; Alberto D. Pascual-Montano (BioLINK@ISMB/ECCB, 2008)

Extraction of biomedical events using case-based reasoning. - Mariana L. Neves; José María Carazo; Alberto D. Pascual-Montano (BioNLP@HLT-NAACL (Shared Task), 2009)

Moara: a Java library for extracting and normalizing gene and protein mentions. - Mariana L. Neves; José María Carazo; Alberto D. Pascual-Montano (BMC Bioinform., 2010)

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. - Dietrich Rebholz-Schuhmann; Antonio Jimeno-Yepes; Chen Li 011; Senay Kafkas; Ian Lewin; Ning Kang 002; Peter T. Corbett; David Milward; Ekaterina Buyko; Elena Beisswanger; Kerstin Hornbostel; Alexandre Kouznetsov; et al. (J. Biomed. Semant., 2011)

U-Compare bio-event meta-service: compatible BioNLP event extraction services. - Yoshinobu Kano; Jari Björne; Filip Ginter; Tapio Salakoski; Ekaterina Buyko; Udo Hahn; K. Bretonnel Cohen; Karin Verspoor; Christophe Roeder; Lawrence E. Hunter; Halil Kilicoglu; Sabine Bergler; et al. (BMC Bioinform., 2011)

WBI-DDI: Drug-Drug Interaction Extraction using Majority Voting. - Philippe Thomas 002; Mariana L. Neves; Tim Rocktäschel; Ulf Leser (SemEval@NAACL-HLT, 2013)

Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts. - Mariana L. Neves; Alexander Damaschun; Nancy Mah; Fritz Lekschas; Stefanie Seltmann; Harald Stachelscheid; Jean-Fred Fontaine; Andreas Kurtz 003; Ulf Leser (Database J. Biol. Databases Curation, 2013)

Applying In-Memory Technology for Automatic Template Filling in the Clinical Domain. - Konrad Herbst; Cindy Fähnrich; Mariana L. Neves; Matthieu-P. Schapranow (CLEF (Working Notes), 2014)

HPI in-memory-based Database System in Task 2b of BioASQ. - Mariana L. Neves (CLEF (Working Notes), 2014)

A survey on annotation tools for the biomedical literature. - Mariana L. Neves; Ulf Leser (Briefings Bioinform., 2014)

BioC interoperability track overview. - Donald C. Comeau; Riza Theresa Batista-Navarro; Hong-Jie Dai; Rezarta Islamaj Dogan; Antonio Jimeno-Yepes; Ritu Khare; Zhiyong Lu; Hernani Marques; Carolyn J. Mattingly; Mariana L. Neves; Yifan Peng 002; Rafal Rak; et al. (Database J. Biol. Databases Curation, 2014)

An analysis on the entity annotations in biological corpora. - Mariana Neves 002 (F1000Research, 2014)

CellFinder: a cell data repository. - Harald Stachelscheid; Stefanie Seltmann; Fritz Lekschas; Jean-Fred Fontaine; Nancy Mah; Mariana L. Neves; Miguel A. Andrade-Navarro; Ulf Leser; Andreas Kurtz 003 (Nucleic Acids Res., 2014)

HPI Question Answering System in the BioASQ 2015 Challenge. - Mariana L. Neves (CLEF (Working Notes), 2015)

Entity-Supported Summarization of Biomedical Abstracts. - Frederik Schulze; Mariana L. Neves (BioTxtM@COLING 2016, 2016)

The Scielo Corpus: a Parallel Corpus of Scientific Publications for Biomedicine. - Mariana L. Neves; Antonio Jimeno-Yepes; Aurélie Névéol (LREC, 2016)

TextAI: Enhancing TextAE with Intelligent Annotation Support. - Maximilian Grundke; Johannes Jasper; Mariya Perchyk; Jan Philipp Sachse; Ralf Krestel; Mariana L. Neves (SMBM, 2016)

Findings of the 2016 Conference on Machine Translation. - Ondrej Bojar; Rajen Chatterjee; Christian Federmann; Yvette Graham; Barry Haddow; Matthias Huck; Antonio Jimeno-Yepes; Philipp Koehn; Varvara Logacheva; Christof Monz; Matteo Negri; Aurélie Névéol; et al. (WMT, 2016)

A parallel collection of clinical trials in Portuguese and English. - Mariana L. Neves (BUCC@ACL, 2017)

Olelo: A Question Answering Application for Biomedicine. - Mariana L. Neves; Hendrik Folkerts; Marcel Jankrift; Julian Niedermeier; Toni Stachewicz; Sören Tietböhl; Milena Kraus; Matthias Uflacker (ACL (System Demonstrations), 2017)

Assessing the performance of Olelo, a real-time biomedical question answering application. - Mariana L. Neves; Fabian Eckert; Hendrik Folkerts; Matthias Uflacker (BioNLP, 2017)

Neural Question Answering at BioASQ 5B. - Georg Wiese; Dirk Weissenborn; Mariana L. Neves (BioNLP, 2017)

Neural Domain Adaptation for Biomedical Question Answering. - Georg Wiese; Dirk Weissenborn; Mariana L. Neves (CoNLL, 2017)

Findings of the WMT 2017 Biomedical Translation Shared Task. - Antonio Jimeno-Yepes; Aurélie Névéol; Mariana L. Neves; Karin Verspoor; Ondrej Bojar; Arthur Boyer; Cristian Grozea; Barry Haddow; Madeleine Kittner; Yvonne Lichtblau; Pavel Pecina; Roland Roller; et al. (WMT, 2017)

Deep learning with word embeddings improves biomedical named entity recognition. - Maryam Habibi; Leon Weber; Mariana L. Neves; David Luis Wiegandt; Ulf Leser (Bioinform., 2017)

Olelo: a web application for intuitive exploration of biomedical literature. - Milena Kraus; Julian Niedermeier; Marcel Jankrift; Sören Tietböhl; Toni Stachewicz; Hendrik Folkerts; Matthias Uflacker; Mariana L. Neves (Nucleic Acids Res., 2017)

RDF2PT: Generating Brazilian Portuguese Texts from RDF Data. - Diego Moussallem; Thiago Castro Ferreira; Marcos Zampieri; Maria Cláudia Cavalcanti; Geraldo Xexéo; Mariana L. Neves; Axel-Cyrille Ngonga Ngomo (LREC, 2018)

Parallel Corpora for the Biomedical Domain. - Aurélie Névéol; Antonio Jimeno-Yepes; Mariana L. Neves; Karin Verspoor (LREC, 2018)

Bf3R at SemEval-2018 Task 7: Evaluating Two Relation Extraction Tools for Finding Semantic Relations in Biomedical Abstracts. - Mariana Neves 002; Daniel Butzke; Gilbert Schönfelder; Barbara Grune (SemEval@NAACL-HLT, 2018)

Findings of the WMT 2018 Biomedical Translation Shared Task: Evaluation on Medline test sets. - Mariana L. Neves; Antonio Jimeno-Yepes; Aurélie Névéol; Cristian Grozea; Amy Siu; Madeleine Kittner; Karin Verspoor (WMT (shared task), 2018)

Evaluation of Scientific Elements for Text Similarity in Biomedical Publications. - Mariana L. Neves; Daniel Butzke; Barbara Grune (ArgMining@ACL, 2019)

Overview of the CLEF eHealth Evaluation Lab 2019. - Liadh Kelly; Hanna Suominen; Lorraine Goeuriot; Mariana L. Neves; Evangelos Kanoulas; Dan Li 015; Leif Azzopardi; René Spijker; Guido Zuccon; Harrisen Scells; João R. M. Palotti (CLEF, 2019)

Overview of the CLEF eHealth 2019 Multilingual Information Extraction. - Mariana L. Neves; Daniel Butzke; Antje Dörendahl; Nora Leich; Benedikt Hummel; Gilbert Schönfelder; Barbara Grune (CLEF (Working Notes), 2019)

CLEF eHealth 2019 Evaluation Lab. - Liadh Kelly; Lorraine Goeuriot; Hanna Suominen; Mariana L. Neves; Evangelos Kanoulas; René Spijker; Leif Azzopardi; Dan Li 015; Jimmy; João R. M. Palotti; Guido Zuccon (ECIR (2), 2019)

Findings of the WMT 2019 Biomedical Translation Shared Task: Evaluation for MEDLINE Abstracts and Biomedical Terminologies. - Rachel Bawden; Kevin Bretonnel Cohen; Cristian Grozea; Antonio Jimeno-Yepes; Madeleine Kittner; Martin Krallinger; Nancy Mah; Aurélie Névéol; Mariana L. Neves; Felipe Soares; Amy Siu; Karin Verspoor; et al. (WMT (3), 2019)

MEDLINE as a Parallel Corpus: a Survey to Gain Insight on French-, Spanish- and Portuguese-speaking Authors' Abstract Writing Practice. - Aurélie Névéol; Antonio Jimeno-Yepes; Mariana L. Neves (LREC, 2020)

Findings of the WMT 2020 Biomedical Translation Shared Task: Basque, Italian and Russian as New Additional Languages. - Rachel Bawden; Giorgio Maria Di Nunzio; Cristian Grozea; Inigo Jauregi Unanue; Antonio Jimeno-Yepes; Nancy Mah; David Martínez 001; Aurélie Névéol; Mariana L. Neves; Maite Oronoz; Olatz Perez-de-Viñaspre; Massimo Piccardi; et al. (WMT@EMNLP, 2020)

Annotationsaurus: A Searchable Directory of Annotation Tools. - Mariana Neves 002; Jurica Seva (CoRR, 2020)

Argumentation Mining in Scientific Literature: From Computational Linguistics to Biomedicine. - Pablo Accuosto; Mariana Neves 002; Horacio Saggion (BIR@ECIR, 2021)

Findings of the WMT 2021 Biomedical Translation Shared Task: Summaries of Animal Experiments as New Test Set. - Lana Yeganova; Dina Wiemann; Mariana L. Neves; Federica Vezzani; Amy Siu; Inigo Jauregi Unanue; Maite Oronoz; Nancy Mah; Aurélie Névéol; David Martínez 001; Rachel Bawden; Giorgio Maria Di Nunzio; et al. (WMT@EMNLP, 2021)

An extensive review of tools for manual annotation of documents. - Mariana Neves 002; Jurica Seva (Briefings Bioinform., 2021)

Findings of the WMT 2022 Biomedical Translation Shared Task: Monolingual Clinical Case Reports. - Mariana Neves 002; Antonio Jimeno-Yepes; Amy Siu; Roland Roller; Philippe Thomas 002; Maika Vicente Navarro; Lana Yeganova; Dina Wiemann; Giorgio Maria Di Nunzio; Federica Vezzani; Christel Gérardin; Rachel Bawden; et al. (WMT, 2022)

Is the ranking of PubMed similar articles good enough? An evaluation of text similarity methods for three datasets. - Mariana L. Neves; Ines Schadock; Beryl Eusemann; Gilbert Schönfelder; Bettina Bert; Daniel Butzke (BioNLP@ACL, 2023)

Bf3R at SemEval-2023 Task 7: a text similarity model for textual entailment and evidence retrieval in clinical trials and animal studies. - Mariana L. Neves (SemEval@ACL, 2023)

Findings of the WMT 2023 Biomedical Translation Shared Task: Evaluation of ChatGPT 3.5 as a Comparison System. - Mariana L. Neves; Antonio Jimeno-Yepes; Aurélie Névéol; Rachel Bawden; Giorgio Maria Di Nunzio; Roland Roller; Philippe Thomas 002; Federica Vezzani; Maika Vicente Navarro; Lana Yeganova; Dina Wiemann; Cristian Grozea (WMT, 2023)

Automatic classification of experimental models in biomedical literature to support searching for alternative methods to animal experiments. - Mariana L. Neves; Antonina Klippert; Fanny Knöspel; Juliane Rudeck; Ailine Stolz; Zsofia Ban; Markus Becker; Kai Diederich; Barbara Grune; Pia Kahnau; Nils Ohnesorge; Johannes Pucher; et al. (J. Biomed. Semant., 2023)

Findings of the WMT 2024 Biomedical Translation Shared Task: Test Sets on Abstract Level. - Mariana L. Neves; Cristian Grozea; Philippe Thomas 002; Roland Roller; Rachel Bawden; Aurélie Névéol; Steffen Castle; Vanessa Bonato; Giorgio Maria Di Nunzio; Federica Vezzani; Maika Vicente Navarro; Lana Yeganova; et al. (WMT, 2024)

Detection of fields of applications in biomedical abstracts with the support of argumentation elements. - Mariana Neves 002 (CoRR, 2024)