PoPMuSiC, rationally designing point mutations in protein structures. - Jean Marc Kwasigroch; Dimitri Gilis; Yves Dehouck; Marianne Rooman (Bioinform., 2002)

Prelude&Fugue, predicting local protein structure, early folding regions and structural weaknesses. - Jean Marc Kwasigroch; Marianne Rooman (Bioinform., 2006)

Development of Novel Statistical Potentials Describing Cation-pi Interactions in Proteins and Comparison with Semiempirical and Quantum Chemistry Approaches. - Dimitri Gilis; Christophe Biot; Eric Buisine; Yves Dehouck; Marianne Rooman (J. Chem. Inf. Model., 2006)

SODa: An Mn/Fe superoxide dismutase prediction and design server. - Jean Marc Kwasigroch; René Wintjens; Dimitri Gilis; Marianne Rooman (BMC Bioinform., 2008)

Thermostability of Salt Bridges versus Hydrophobic Interactions in Proteins Probed by Statistical Potentials. - Benjamin Folch; Marianne Rooman; Yves Dehouck (J. Chem. Inf. Model., 2008)

Fast and accurate predictions of protein stability changes upon mutations using statistical potentials and neural networks: PoPMuSiC-2.0. - Yves Dehouck; Aline Grosfils; Benjamin Folch; Dimitri Gilis; Philippe Bogaerts; Marianne Rooman (Bioinform., 2009)

Robustness Analysis of a Linear Dynamical Model of the Drosophila Gene Expression. - Alexandre Haye; Jaroslav Albert; Marianne Rooman (CIBB, 2010)

Gene expression model (in)validation by Fourier analysis. - Tomasz Konopka; Marianne Rooman (BMC Syst. Biol., 2010)

Modeling Delays in State Transition of a Bistable Genetic Switch under the Influence of Extrinsic Noise. - Jaroslav Albert; Marianne Rooman (BIOINFORMATICS, 2011)

PoPMuSiC 2.1 : a web server for the estimation of protein stability changes upon mutation and sequence optimality. - Yves Dehouck; Jean Marc Kwasigroch; Dimitri Gilis; Marianne Rooman (BMC Bioinform., 2011)

Identification of protein stability patches that pinpoint key structural or functional sites. - Marie De Laet; Yves Dehouck; Dimitri Gilis; Marianne Rooman (BCB, 2012)

BeAtMuSiC: prediction of changes in protein-protein binding affinity on mutations. - Yves Dehouck; Jean Marc Kwasigroch; Marianne Rooman; Dimitri Gilis (Nucleic Acids Res., 2013)

Stability Curve Prediction of Homologous Proteins Using Temperature-Dependent Statistical Potentials. - Fabrizio Pucci; Marianne Rooman (PLoS Comput. Biol., 2014)

Multilevel biological characterization of exomic variants at the protein level significantly improves the identification of their deleterious effects. - Daniele Raimondi; Andrea M. Gazzo; Marianne Rooman; Tom Lenaerts; Wim F. Vranken (Bioinform., 2016)

SCooP: an accurate and fast predictor of protein stability curves as a function of temperature. - Fabrizio Pucci; Jean Marc Kwasigroch; Marianne Rooman (Bioinform., 2017)

SEPIa, a knowledge-driven algorithm for predicting conformational B-cell epitopes from the amino acid sequence. - Georgios A. Dalkas; Marianne Rooman (BMC Bioinform., 2017)

DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins. - Daniele Raimondi; Ibrahim Tanyalcin; Julien Ferté; Andrea M. Gazzo; Gabriele Orlando; Tom Lenaerts; Marianne Rooman; Wim F. Vranken (Nucleic Acids Res., 2017)

Quantification of biases in predictions of protein stability changes upon mutations. - Fabrizio Pucci; Katrien V. Bernaerts; Jean Marc Kwasigroch; Marianne Rooman (Bioinform., 2018)

Lexicon Visualization Library and JavaScript for Scientific Data Visualization. - Ibrahim Tanyalcin; Carla Al Assaf; Julien Ferté; François Ancien; Taushif Khan; Guillaume Smits; Marianne Rooman; Wim F. Vranken (Comput. Sci. Eng., 2018)

SOLart: a structure-based method to predict protein solubility and aggregation. - Qingzhen Hou; Jean Marc Kwasigroch; Marianne Rooman; Fabrizio Pucci (Bioinform., 2020)

MutaFrame - an interpretative visualization framework for deleteriousness prediction of missense variants in the human exome. - François Ancien; Fabrizio Pucci; Wim F. Vranken; Marianne Rooman (Bioinform., 2021)

AI challenges for predicting the impact of mutations on protein stability. - Fabrizio Pucci; Martin Schwersensky; Marianne Rooman (CoRR, 2021)

BRANEart: Identify Stability Strength and Weakness Regions in Membrane Proteins. - Sankar Basu; Simon S. Assaf; Fabian Teheux; Marianne Rooman; Fabrizio Pucci (Frontiers Bioinform., 2021)

SpikePro: a webserver to predict the fitness of SARS-CoV-2 variants. - Gabriel Cia; Jean Marc Kwasigroch; Marianne Rooman; Fabrizio Pucci (Bioinform., 2022)

Critical review of conformational B-cell epitope prediction methods. - Gabriel Cia; Fabrizio Pucci; Marianne Rooman (Briefings Bioinform., 2023)

Estimating the Vertical Ionization Potential of Single-Stranded DNA Molecules. - Marianne Rooman; Fabrizio Pucci (J. Chem. Inf. Model., 2023)

Quantification of biases in predictions of protein-protein binding affinity changes upon mutations. - Matsvei Tsishyn; Fabrizio Pucci; Marianne Rooman (Briefings Bioinform., 2024)

pycofitness - Evaluating the fitness landscape of RNA and protein sequences. - Fabrizio Pucci; Mehari B. Zerihun; Marianne Rooman; Alexander Schug (Bioinform., 2024)