Mining a clinical data warehouse to discover disease-finding associations using co-occurrence statistics. - Hui Cao 002; Marianthi Markatou; Genevieve B. Melton; Michael F. Chiang; George Hripcsak (AMIA, 2005)

Analysis of Variance of Cross-Validation Estimators of the Generalization Error. - Marianthi Markatou; Hong Tian; Shameek Biswas; George Hripcsak (J. Mach. Learn. Res., 2005)

Machine learning and word sense disambiguation in the biomedical domain: design and evaluation issues. - Hua Xu 001; Marianthi Markatou; Rositsa Dimova; Hongfang Liu; Carol Friedman (BMC Bioinform., 2006)

Inter-patient distance metrics using SNOMED CT defining relationships. - Genevieve B. Melton; Simon Parsons; Frances P. Morrison; Adam S. Rothschild; Marianthi Markatou; George Hripcsak (J. Biomed. Informatics, 2006)

Detection of Practice Pattern Trends through Natural Language Processing of Clinical Narratives and Biomedical Literature. - Elizabeth S. Chen; Peter D. Stetson; Yves A. Lussier; Marianthi Markatou; George Hripcsak; Carol Friedman (AMIA, 2007)

PDA-based Informatics Strategies for Tobacco Use Screening and Smoking Cessation Management: A Case Study. - Suzanne Bakken; W. Dan Roberts; Elizabeth S. Chen; Joann Dilone; Nam-Ju Lee; Eneida A. Mendonça; Marianthi Markatou (MedInfo, 2007)

Gene symbol disambiguation using knowledge-based profiles. - Hua Xu 001; Jungwei Fan 001; George Hripcsak; Eneida A. Mendonça; Marianthi Markatou; Carol Friedman (Bioinform., 2007)

A statistical methodology for analyzing co-occurrence data from a large sample. - Hui Cao 002; George Hripcsak; Marianthi Markatou (J. Biomed. Informatics, 2007)

Automated Knowledge Acquisition from Clinical Narrative Reports. - Xiaoyan Wang; Amy E. Chused; Noémie Elhadad; Carol Friedman; Marianthi Markatou (AMIA, 2008)

Research Paper: Automated Acquisition of Disease-Drug Knowledge from Biomedical and Clinical Documents: An Initial Study. - Elizabeth S. Chen; George Hripcsak; Hua Xu 001; Marianthi Markatou; Carol Friedman (J. Am. Medical Informatics Assoc., 2008)

Use abstracted patient-specific features to assist an information-theoretic measurement to assess similarity between medical cases. - Hui Cao 002; Genevieve B. Melton; Marianthi Markatou; George Hripcsak (J. Biomed. Informatics, 2008)

Viewpoint Paper: Large Datasets in Biomedicine: A Discussion of Salient Analytic Issues. - Anshu Sinha; George Hripcsak; Marianthi Markatou (J. Am. Medical Informatics Assoc., 2009)

Research Paper: Active Computerized Pharmacovigilance Using Natural Language Processing, Statistics, and Electronic Health Records: A Feasibility Study. - Xiaoyan Wang; George Hripcsak; Marianthi Markatou; Carol Friedman (J. Am. Medical Informatics Assoc., 2009)

Selecting information in electronic health records for knowledge acquisition. - Xiaoyan Wang; Herbert S. Chase; Marianthi Markatou; George Hripcsak; Carol Friedman (J. Biomed. Informatics, 2010)

A Platform for Processing Expression of Short Time Series (PESTS). - Anshu Sinha; Marianthi Markatou (BMC Bioinform., 2011)

Information methods for model selection in linear mixed effects models with application to HCV data. - Rositsa Dimova; Marianthi Markatou; Andrew H. Talal (Comput. Stat. Data Anal., 2011)

Text mining for the Vaccine Adverse Event Reporting System: medical text classification using informative feature selection. - Taxiarchis Botsis; Michael D. Nguyen; Emily Jane Woo; Marianthi Markatou; Robert Ball (J. Am. Medical Informatics Assoc., 2011)

Combining Knowledge and Data Driven Insights for Identifying Risk Factors using Electronic Health Records. - Jimeng Sun 001; Jianying Hu; Dijun Luo; Marianthi Markatou; Fei Wang 001; Shahram Ebadollahi; Zahra Daar; Walter F. Stewart (AMIA, 2012)

SOR: Scalable Orthogonal Regression for Low-Redundancy Feature Selection and its Healthcare Applications. - Dijun Luo; Fei Wang 001; Jimeng Sun 001; Marianthi Markatou; Jianying Hu; Shahram Ebadollahi (SDM, 2012)

Case-based reasoning in comparative effectiveness research. - Marianthi Markatou; Prabani Kuruppumullage Don; Jianying Hu; Fei Wang 001; Jimeng Sun 001; Robert Sorrentino; Shahram Ebadollahi (IBM J. Res. Dev., 2012)

A pattern discovery framework for adverse event evaluation and inference in spontaneous reporting systems. - Marianthi Markatou; Robert Ball (Stat. Anal. Data Min., 2014)

Empirical likelihood ratio confidence interval estimation of best linear combinations of biomarkers. - Xiwei Chen; Albert Vexler; Marianthi Markatou (Comput. Stat. Data Anal., 2015)

A semiparametric method for clustering mixed data. - Alex Foss; Marianthi Markatou; Bonnie Ray; Aliza Heching (Mach. Learn., 2016)

Non-Quadratic Distances in Model Assessment. - Marianthi Markatou; Yang Chen 016 (Entropy, 2018)

A framework for patient-centered telemedicine: Application and lessons learned from vulnerable populations. - Andrew H. Talal; Elisavet M. Sofikitou; Urmo Jaanimägi; Marija Zeremski; Jonathan N. Tobin; Marianthi Markatou (J. Biomed. Informatics, 2020)

Distance-Based Estimation Methods for Models for Discrete and Mixed-Scale Data. - Elisavet M. Sofikitou; Ray Liu; Huipei Wang; Marianthi Markatou (Entropy, 2021)

Likelihood Ratio Test-Based Drug Safety Assessment using R Package pkg{pvLRT}. - Saptarshi Chakraborty; Marianthi Markatou; Robert Ball (R J., 2023)

Drag, Drop, Merge: A Tool for Streamlining Integration of Longitudinal Survey Instruments. - Pratik Pokharel; Juseung Lee 002; Oliver Kennedy; Marianthi Markatou; Andrew H. Talal; Jeff Good; Raktim Mukhopadhyay (HILDA@SIGMOD, 2024)

Goodness-of-Fit and Clustering of Spherical Data: the QuadratiK package in R and Python. - Giovanni Saraceno; Marianthi Markatou; Raktim Mukhopadhyay; Mojgan Golzy (CoRR, 2024)

QuadratiK: A Python and R package for clustering on the sphere and goodness-of-fit tests. - Giovanni Saraceno; Raktim Mukhopadhyay; Marianthi Markatou (SoftwareX, 2025)