Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics. - Ulrike Mückstein; Hakim Tafer; Stephan H. Bernhart; Maribel Hernandez-Rosales; Jörg Vogel 002; Peter F. Stadler; Ivo L. Hofacker (BIRD, 2008)

From event-labeled gene trees to species trees. - Maribel Hernandez-Rosales; Marc Hellmuth; Nicolas Wieseke; Katharina T. Huber; Vincent Moulton; Peter F. Stadler (BMC Bioinform., 2012)

Simulation of gene family histories. - Maribel Hernandez-Rosales; Nicolas Wieseke; Marc Hellmuth; Peter F. Stadler (BMC Bioinform., 2014)

Spiders can be Recognized by Counting Their Legs. - Sarah Berkemer; Ricardo Régis Cavalcante Chaves; Adrian Fritz; Marc Hellmuth; Maribel Hernandez-Rosales; Peter F. Stadler (Math. Comput. Sci., 2015)

Inference of Phylogenetic Trees from the Knowledge of Rare Evolutionary Events. - Marc Hellmuth; Maribel Hernandez-Rosales; Yangjing Long; Peter F. Stadler (CoRR, 2016)

Forecasting, clustering and patrolling criminal activities. - Hiram Calvo; Salvador Godoy-Calderón; Marco A. Moreno-Armendáriz; Maribel Hernandez-Rosales (Intell. Data Anal., 2017)

Best Match Graphs and Reconciliation of Gene Trees with Species Trees. - Manuela Geiß; Marcos González; Alitzel López Sánchez; Dulce I. Valdivia; Marc Hellmuth; Maribel Hernández-Rosales; Peter F. Stadler (CoRR, 2019)

Hierarchical Colorings of Cographs. - Dulce I. Valdivia; Manuela Geiß; Marc Hellmuth; Maribel Hernández-Rosales; Peter F. Stadler (CoRR, 2019)

From pairs of most similar sequences to phylogenetic best matches. - Peter F. Stadler; Manuela Geiß; David Schaller 001; Alitzel López Sánchez; Marcos E. González Laffitte; Dulce I. Valdivia; Marc Hellmuth; Maribel Hernandez-Rosales (Algorithms Mol. Biol., 2020)

The Contact Network of Mexico City. - Guillermo de Anda-Jáuregui; Plinio Guzmán; Maribel Hernández-Rosales (CoRR, 2020)

Deciphering the Tissue-Specific Regulatory Role of Intronless Genes Across Cancers. - Katia Aviña-Padilla; José Antonio Ramírez-Rafael; Octavio Zambada-Moreno; Gabriel Emilio Herrera-Oropeza; Guillermo Romero; Ishaan Gupta; Maribel Hernández-Rosales (RECOMB-CG, 2022)

Intermunicipal Travel Networks of Mexico (2020-2021). - Oscar Fontanelli; Plinio Guzmán; Amílcar Meneses; Alfredo Hernández 003; Marisol Flores-Garrido; Maribel Hernández-Rosales; Guillermo de Anda-Jáuregui (CoRR, 2022)

Human mobility patterns in Mexico City and their links with socioeconomic variables during the COVID-19 pandemic. - Oscar Fontanelli; Dulce I. Valdivia; Guillermo Romero; Oliver Medina; Wentian Li; Maribel Hernández-Rosales (CoRR, 2022)

Hierarchical and modularly-minimal vertex colorings. - Dulce I. Valdivia; Maribel Hernández-Rosales; Manuela Geiß; Peter F. Stadler; Marc Hellmuth (Art Discret. Appl. Math., 2022)

REvolutionH-tl: Reconstruction of Evolutionary Histories tool. - José Antonio Ramírez-Rafael; Annachiara Korchmaros; Katia Aviña-Padilla; Alitzel López Sánchez; Andrea Arlette España-Tinajero; Marc Hellmuth; Peter F. Stadler; Maribel Hernández-Rosales (RECOMB-CG, 2024)

Evolutionary Reconstruction of Hormone-bHLH Regulatory Networks in Solanaceae: Phylogenomics Insights from PSTVd-Tomato Interactions. - Katia Aviña-Padilla; Octavio Zambada-Moreno; Manuel A. Barrios-Izás; Michelle Bustamante-Castillo; Maribel Hernández-Rosales (RECOMB-CG, 2025)

The path-label reconciliation (PLR) dissimilarity measure for gene trees. - Alitzel López Sánchez; José Antonio Ramírez-Rafael; Alejandro Flores-Lamas; Maribel Hernández-Rosales; Manuel Lafond (Algorithms Mol. Biol., 2025)