Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses. - Laurent Jourdren; Maria Bernard; Marie-Agnès Dillies; Stéphane Le Crom (Bioinform., 2012)

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis. - Marie-Agnès Dillies; Andrea Rau; Julie Aubert; Christelle Hennequet-Antier; Marine Jeanmougin; Nicolas Servant; Céline Keime; Guillemette Marot; David Castel; Jordi Estelle; Gregory Guernec; Bernd Jagla; et al. (Briefings Bioinform., 2013)

MEMHDX: an interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets. - Véronique Hourdel; Stevenn Volant; Darragh P. O'Brien; Alexandre Chenal; Julia Chamot-Rooke; Marie-Agnès Dillies; Sébastien Brier (Bioinform., 2016)

Improvement of variables interpretability in kernel PCA. - Mitja Briscik; Marie-Agnès Dillies; Sébastien Déjean (BMC Bioinform., 2023)

Supervised multiple kernel learning approaches for multi-omics data integration. - Mitja Briscik; Gabriele Tazza; László Vidács; Marie-Agnès Dillies; Sébastien Déjean (BioData Min., 2024)