An Organizational Environment for in Silico Experiments in Molecular Biology. - Yuan Lin 004; Marie-Angélique Laporte; Lucile Soler; Isabelle Mouger; Thérèse Libourel (RED@ESWC, 2011)

GreenPhylDB v2.0: comparative and functional genomics in plants. - Mathieu Rouard; Valentin Guignon; Christelle Aluome; Marie-Angélique Laporte; Gaëtan Droc; Christian Walde; Christian M. Zmasek; Christophe Périn; Matthieu G. Conte (Nucleic Acids Res., 2011)

ThesauForm - Traits: A web based collaborative tool to develop a thesaurus for plant functional diversity research. - Marie-Angélique Laporte; Isabelle Mougenot; Eric Garnier (Ecol. Informatics, 2012)

A Semantic Web Faceted Search System for Facilitating Building of Biodiversity and Ecosystems Services. - Marie-Angélique Laporte; Isabelle Mougenot; Eric Garnier; Ulrike Stahl; Lutz Maicher; Jens Kattge (DILS, 2014)

The Planteome Project. - Laurel Cooper; Austin Meier; Justin Elser; Justin Preece; Xu Xu; Ryan Kitchen; Botong Qu; Eugene Zhang; Sinisa Todorovic; Pankaj Jaiswal; Marie-Angélique Laporte; Elizabeth Arnaud; et al. (ICBO/BioCreative, 2016)

Data-driven Agricultural Research for Development: A Need for Data Harmonization Via Semantics. - Medha Devare; Céline Aubert; Marie-Angélique Laporte; Léo Valette; Elizabeth Arnaud; Pier Luigi Buttigieg (ICBO/BioCreative, 2016)

Comparison of Ontology Mapping Techniques to Map Plant Trait Ontologies. - Marie-Angélique Laporte; Léo Valette; Laurel Cooper; Chris Mungall; Austin Meier; Pankaj Jaiswal; Elizabeth Arnaud (ICBO/BioCreative, 2016)

Annotating Germplasm to Planteome Reference Ontologies. - Austin Meier; Laurel Cooper; Justin Elser; Pankaj Jaiswal; Marie-Angélique Laporte (ICBO/BioCreative, 2016)

A Natural Language Processing Pipeline to Extract Phenotypic Data from Formal Taxonomic Descriptions with a Focus on Flagellate Plants. - Lorena Endara; J. Gordon Burleigh; Laurel Cooper; Pankaj Jaiswal; Marie-Angélique Laporte; Hong Cui (ICBO, 2018)

OOPS: The Ontology of Plant Stress, A Semi-Automated Standardization Methodology. - Austin Meier; Marie-Angélique Laporte; Justin Elser; Laurel Cooper; Justin Preece; Pankaj Jaiswal; Jorrit H. Poelen (ICBO, 2018)

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. - Lisa C. Harper; Jacqueline D. Campbell; Ethalinda K. S. Cannon; Sook Jung; Monica Poelchau; Ramona L. Walls; Carson M. Andorf; Elizabeth Arnaud; Tanya Z. Berardini; Clayton L. Birkett; Steven B. Cannon; James D. Carson; et al. (Database J. Biol. Databases Curation, 2018)

AgroPortal: A vocabulary and ontology repository for agronomy. - Clément Jonquet; Anne Toulet; Elizabeth Arnaud; Sophie Aubin; Esther Dzalé Yeumo Kaboré; Vincent Emonet; John B. Graybeal; Marie-Angélique Laporte; Mark A. Musen; Valeria Pesce; Pierre Larmande (Comput. Electron. Agric., 2018)

The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics. - Laurel Cooper; Austin Meier; Marie-Angélique Laporte; Justin Elser; Chris Mungall; Brandon T. Sinn; Dario Cavaliere; Seth Carbon; Nathan A. Dunn; Barry Smith 001; Botong Qu; Justin Preece; et al. (Nucleic Acids Res., 2018)

BrAPI - an application programming interface for plant breeding applications. - Peter Selby; Rafael Abbeloos; Jan Erik Backlund; Martin Basterrechea Salido; Guillaume Bauchet; Omar E. Benites-Alfaro; Clayton L. Birkett; Viana C. Calaminos; Pierre Carceller; Guillaume Cornut; Bruno Vasques Costa; Jeremy D. Edwards; et al. (Bioinform., 2019)

The Plant Trait Ontology Links Wheat Traits for Crop Improvement and Genomics (short paper). - Laurel Cooper; Marie-Angélique Laporte; Justin Elser; Victoria Carollo Blake; Taner Z. Sen; Chris Mungall; Elizabeth Arnaud; Pankaj Jaiswal (ICBO/ODLS, 2020)

The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems. - Elizabeth Arnaud; Marie-Angélique Laporte; Soonho Kim; Céline Aubert; Sabina Leonelli; Berta Miro; Laurel Cooper; Pankaj Jaiswal; Gideon Kruseman; Rosemary Shrestha; Pier Luigi Buttigieg; Christopher J. Mungall; et al. (Patterns, 2020)

Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium. - Jennifer L. Clarke; Laurel D. Cooper; Monica F. Poelchau; Tanya Z. Berardini; Justin Elser; Andrew D. Farmer; Stephen P. Ficklin; Sunita Kumari; Marie-Angélique Laporte; Rex T. Nelson; Rie Sadohara; Peter Selby; et al. (Database J. Biol. Databases Curation, 2023)

Ontologies for increasing the FAIRness of plant research data. - Kathryn Dumschott; Hannah Dörpholz; Marie-Angélique Laporte; Dominik Brilhaus; Andrea Schrader; Björn Usadel; Steffen Neumann; Elizabeth Arnaud; Angela Kranz (CoRR, 2023)

Editorial: Knowledge graph technologies: the next Frontier of the food, agriculture, and water domains. - Catherine Roussey; Christophe Guéret; Marie-Angélique Laporte (Frontiers Artif. Intell., 2023)

ClimMob: Software to support experimental citizen science in agriculture. - Carlos Quirós; Kauê de Sousa; Jonathan Steinke; Brandon Madriz; Marie-Angélique Laporte; Elizabeth Arnaud; Rhys Manners; Berta Ortiz-Crespo; Anna Müller; Jacob van Etten (Comput. Electron. Agric., 2024)

Post-composing ontology terms for efficient phenotyping in plant breeding. - Naama Menda; Bryan J. Ellerbrock; Christiano C. Simoes; Srikanth Kumar Karaikal; Christine Nyaga; Mirella Flores-Gonzalez; Isaak Y. Tecle; David Lyon; Afolabi Agbona; Paterne A Agre; Prasad Peteti; Violet Akech; et al. (Database J. Biol. Databases Curation, 2025)