Environmental genes and genomes: understanding the differences and challenges in the approaches and software for their analyses. - Marie Lisandra Zepeda Mendoza; Thomas Sicheritz-Pontén; M. Thomas P. Gilbert (Briefings Bioinform., 2015)

Odintifier - A computational method for identifying insertions of organellar origin from modern and ancient high-throughput sequencing data based on haplotype phasing. - Jose Samaniego Castruita; Marie Lisandra Zepeda Mendoza; Ross Barnett; Nathan Wales; Marcus Gilbert (BMC Bioinform., 2015)

A framework for developing a knowledge management platform. - Marie Lisandra Zepeda Mendoza; Sonali Agarwal; James A. Blackshaw; Vanesa Bol; Audrey Fazzi; Filippo Fiorini; Amy Louise Foreman; Nancy George; Brett R. Johnson; Brian Martin; Dave McComb; Euphemia Mutasa-Gottgens; et al. (CoRR, 2024)

Bi-Axial Transformers: Addressing the Increasing Complexity of EHR Classification. - Rachael DeVries; Casper Christensen; Marie Lisandra Zepeda Mendoza; Ole Winther (CoRR, 2025)