hCoCena: horizontal integration and analysis of transcriptomics datasets. - Marie Oestreich; Lisa Holsten; Shobhit Agrawal; Kilian Dahm; Philipp Koch; Han Jin; Matthias Becker 003; Thomas Ulas (Bioinform., 2022)

Towards Biologically Plausible and Private Gene Expression Data Generation. - Dingfan Chen; Marie Oestreich; Tejumade Afonja; Raouf Kerkouche; Matthias Becker 003; Mario Fritz (CoRR, 2024)

Deep Generative Modelling in Systems Medicine: From Transcriptomics Data to Drug Development - Marie Oestreich (2024)

Small molecule autoencoders: architecture engineering to optimize latent space utility and sustainability. - Marie Oestreich; Iva Ewert; Matthias Becker 003 (J. Cheminformatics, 2024)

DrugDiff: small molecule diffusion model with flexible guidance towards molecular properties. - Marie Oestreich; Erinc Merdivan; Michael Lee; Joachim L. Schultze; Marie Piraud; Matthias Becker 003 (J. Cheminformatics, 2025)